Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi22g00101 ATGTCAGCTGGCATTGATGGTACGTGGTATGATGCTCATGCAACCTTCTATAGTGACATGAGTGGTGGAGAAACCATGAAGGGTGCTTGTGGTTATGGTAATCTCTTTGAGCAAGGGTATGGGCTTCAGACCGCAGCACTAAGCACAGCTCTATTTAACAATGGATTCGCATGTGGTGCCTGTTTTGTGATAAAGTGTGTCAATGACCCTCAATGGTGTATAAAGAATGCAGGCTCAATCAAAGTGACTGCAACAAATTTTTGTCCTCCTAATTTCGACAAGCCTAGTGGCAACTGGTGCAACCCTCCACAAAAACACTTTGACTTGACAATGAAAATGTTCACCACTCTTGCTCCATACAAAGCTGGGATCATCCCTGTTCAATATCGCCGTGTTCCATGCACCAAGATTGGGGGTGTTAAGTTTGAGATCAAAGGAAACCCTTTTTGGTTGCTTGTTTTGGTGTACAATGTTGCCAATGCTGGTGATGTTTCTAGTGTGAGCATCAAAGGGTCTAAGACTGGATGGCTTCCAATGACACATAATTGGGGACAAAATTGGAATGCTAAATCTAATTTGGTAGGACAAGCCTTGTCATTTCAGGAGGAGGAATCAGAGGTGGTGCTAGTGGAGGCTATGGAGGTGGTAAAGGTGGAGGAGTTGGAGGTGGACATGGTGGTGGCATATAAGGTGGTGCTGGCGGGGGCCATGGAGGTGGCATTGGTGCTGGTGGAGGCTATGGAGGTGGTAAAGGTGGTGGATTTAGAGGAGTTGGCAGTGGGCATGGTGGCGGTTCTGGAGGAGTTGGTGGTGACTTTTACTTTAAAACTTCCTAAAAGCACAAATGATTTTACGTTGCCATGCAATTAA 870 0.4586 MSAGIDGTWYDAHATFYSDMSGGETMKGACGYGNLFEQGYGLQTAALSTALFNNGFACGACFVIKCVNDPQWCIKNAGSIKVTATNFCPPNFDKPSGNWCNPPQKHFDLTMKMFTTLAPYKAGIIPVQYRRVPCTKIGGVKFEIKGNPFWLLVLVYNVANAGDVSSVSIKGSKTGWLPMTHNWGQNWNAKSNLVGQALSFQEEESEVVLVEAMEVVKVEELEVDMVVAYKVVLAGAMEVALVLVEAMEVVKVVDLEELAVGMVAVLEELVVTFTLKLPKSTNDFTLPCN 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi22g00101 289 SUPERFAMILY Barwin-like endoglucanases 8 157 IPR036908 -
Sebi22g00101 289 SMART dpbb_1 44 129 IPR007112 -
Sebi22g00101 289 SUPERFAMILY PHL pollen allergen 138 202 IPR036749 -
Sebi22g00101 289 PRINTS Expansin/Lol pI family signature 176 190 IPR007118 GO:0005576
Sebi22g00101 289 PRINTS Expansin/Lol pI family signature 122 138 IPR007118 GO:0005576
Sebi22g00101 289 PRINTS Expansin/Lol pI family signature 26 44 IPR007118 GO:0005576
Sebi22g00101 289 PRINTS Expansin/Lol pI family signature 8 23 IPR007118 GO:0005576
Sebi22g00101 289 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Sebi22g00101 289 PANTHER EXPANSIN-A15 7 217 IPR002963 GO:0009664
Sebi22g00101 289 Gene3D - 139 220 IPR036749 -
Sebi22g00101 289 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 27 139 IPR007112 -
Sebi22g00101 289 Gene3D - 1 135 IPR036908 -
Sebi22g00101 289 CDD DPBB_EXPA_N 9 134 - -
Sebi22g00101 289 PRINTS Expansin signature 39 53 IPR002963 GO:0009664
Sebi22g00101 289 PRINTS Expansin signature 97 114 IPR002963 GO:0009664
Sebi22g00101 289 PRINTS Expansin signature 150 171 IPR002963 GO:0009664
Sebi22g00101 289 PRINTS Expansin signature 114 127 IPR002963 GO:0009664
Sebi22g00101 289 PRINTS Expansin signature 138 150 IPR002963 GO:0009664
Sebi22g00101 289 PRINTS Expansin signature 80 90 IPR002963 GO:0009664
Sebi22g00101 289 PRINTS Expansin signature 66 77 IPR002963 GO:0009664
Sebi22g00101 289 PRINTS Expansin signature 185 206 IPR002963 GO:0009664
Sebi22g00101 289 Pfam Lytic transglycolase 44 129 IPR009009 -
Sebi22g00101 289 Pfam Expansin C-terminal domain 140 202 IPR007117 -
Sebi22g00101 289 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 149 201 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi22g00101 Sebi-Chr22 2834771 2836939 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi22g00101 4 208 Expansin Gene Family AT5G39280 62.439 4.54e-102 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi22g00101 - - qsa:O6P43_002576 340.887