Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi22g00083 ATGGGATTGAGTGGAAACAAATTTTATGGCCATCTTTCACCAAATTGGGGAAAGTGCTACAACTTGACAAGCCTCATTATCTCTAACAATAATTTATCAGGTGGTATACCACCAGAGCTAGGCAAGGCAACCAACTTACATGTACTTGACTTGTCTTCAAACCATCTTACAGGGAAAATTCCAAATGAACTTGGCAGCTTGACTAAGTTGAACAAACTCATGTTAAGCAGCAATCATCTTTCAGGAAATGTTCCTGTACAAATAGCATCATTACATGATATGGAAACCTTGGAACTTGCAGAAAATAATTTAAGTGGTTTCATCACAACACAACTTGCAGGGTTGTCTAAGTTGTGGAACTTGAATTTGAGCCAAAATAAATTCAAGGGGAAAATACCTATTGAGTTTGGCCAATTCAAAGCTCTTCAAATTCTTGATCTCAGTGGGAATCTTTTGGGTGGAACAATACCATCTATGTTCTCACAGTTGAAATACTTAGAAACATTGAATCTCTCACATAATAATCTTTCTGGTGTCATTCCCTCTGACTTTAGACAAATGTTAAGCTTGTCTTATGTTGATATATCATACAACCAATTAGAGGGTCCACTTCCAGACATCCCAGCCTTCCATAATACTAAAATTGAAGCATTGAGAAACAACAAAGGCTTGTGTGGTAATGTCTCTGGCTTAGAGCCTTGCCCAAGATCAAGTGGGGAAACTCAAAATCATAAGAATAACGAAGTCTTATTGATAGTTTTACCCCTTACAGTGGGCGCTCTAATACTTGCATTAGTTTCTTTTGGAGTGTCAAAACATCTCTCCCAAACTTCAGCCAATGAAGAATGCCAGGGAAGTGTTTACAAGGCAGAGTTGCACACTGGTCAAGTTGTTGCTGTGAAGAAACTCCAATCAGTACCAAATGAAGAAATTTCCAATCTAAAAGCTTTCAGAAGTGAGATCCAAGCTTTGACAGAAATTCGACACCTGCTTTATGCTATATGCATGCACCATGATTGCTCACCTCCTATTGTTCATCGAGATATATCAAGCAAGAATATTCTTTTGGATTTAGAACATGTGGCTCATGTCTCAGACTTTGGAACTGCCAAGCTTCTTAATCCTAATTCAACCAACTGGACCTCATTTGTTGGCACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTAAATGAGAAATGTGATGTGTATAGTTTTGGAGTAGTAGCATTGGAAATACTTTTTGGGAAGCACCCTGGAGATGTTATATCTTCTTCCTTGCTATCATCTTCATGGACTGCAGTGGGTGATATTATGCCATTGATGGATAAGTACTTGGACCAACGTCTCCCTCATCCCACAAATCCTATTGTTAAGGAGTTGGTATCAATTGTAAGGATAGCAATTGCTTGCTTGCTTGAAAGCCCACGTTCTCGCCCTACCATGGAGCAAGTTGCCAAGGAGCTCTTGATCTCAAAGTAA 1491 0.3917 MGLSGNKFYGHLSPNWGKCYNLTSLIISNNNLSGGIPPELGKATNLHVLDLSSNHLTGKIPNELGSLTKLNKLMLSSNHLSGNVPVQIASLHDMETLELAENNLSGFITTQLAGLSKLWNLNLSQNKFKGKIPIEFGQFKALQILDLSGNLLGGTIPSMFSQLKYLETLNLSHNNLSGVIPSDFRQMLSLSYVDISYNQLEGPLPDIPAFHNTKIEALRNNKGLCGNVSGLEPCPRSSGETQNHKNNEVLLIVLPLTVGALILALVSFGVSKHLSQTSANEECQGSVYKAELHTGQVVAVKKLQSVPNEEISNLKAFRSEIQALTEIRHLLYAICMHHDCSPPIVHRDISSKNILLDLEHVAHVSDFGTAKLLNPNSTNWTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVVALEILFGKHPGDVISSSLLSSSWTAVGDIMPLMDKYLDQRLPHPTNPIVKELVSIVRIAIACLLESPRSRPTMEQVAKELLISK 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi22g00083 496 Gene3D Transferase(Phosphotransferase) domain 1 335 495 - -
Sebi22g00083 496 PANTHER LEUCINE RICH REPEAT KINASE 2 2 330 - -
Sebi22g00083 496 Gene3D Phosphorylase Kinase; domain 1 281 334 - -
Sebi22g00083 496 Pfam Protein kinase domain 331 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi22g00083 496 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 1 82 - -
Sebi22g00083 496 Gene3D Ribonuclease Inhibitor 1 243 IPR032675 -
Sebi22g00083 496 Pfam Leucine rich repeat 21 80 IPR001611 GO:0005515
Sebi22g00083 496 Pfam Leucine rich repeat 141 200 IPR001611 GO:0005515
Sebi22g00083 496 PRINTS Leucine-rich repeat signature 163 176 - -
Sebi22g00083 496 PRINTS Leucine-rich repeat signature 46 59 - -
Sebi22g00083 496 SUPERFAMILY Protein kinase-like (PK-like) 285 492 IPR011009 -
Sebi22g00083 496 ProSiteProfiles Leucine-rich repeat profile. 165 186 IPR001611 GO:0005515
Sebi22g00083 496 ProSiteProfiles Protein kinase domain profile. 107 494 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi22g00083 496 ProSiteProfiles Leucine-rich repeat profile. 45 67 IPR001611 GO:0005515
Sebi22g00083 496 SUPERFAMILY L domain-like 3 226 - -
Sebi22g00083 496 ProSitePatterns Tyrosine protein kinases specific active-site signature. 344 356 IPR008266 GO:0004672|GO:0006468
Sebi22g00083 496 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 110 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi22g00083 Sebi-Chr22 2408456 2410359 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi22g00083 1 392 Receptor kinase-like Gene Family AT4G08850 37.323 4.87e-90 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi22g00083 Pkinase 9.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi22g00083 - - mtr:25499886 605.134