Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi22g00067 ATGGCTTCCCGTTATGATTTAATCCGTAATGTGAATGGAGGCTCTGAGCATAAGATATGGAGAATTAAAGTCAGAGTCATTAGGCTATGGAGGTCTTCATATTTTAAGGATAACAATAATAAACCAATGATTGAATTGGTTGTTTTGGACGAACAGGGAGGTCGTATCCAATGCACGGTGAAGAGCATTCATGTGTATCTGTTTGAGAATAGTATCAACGAAGGTAATGTGTACATGCTAGAAAACCTCAGCGTTGCACTTAACAGTGGAAAGTACAAACCTACAATGCATGAATTTAGAATGTTCTTCAAGAGAGAGACACGAGTTACTCTGGTAGAAGATTCTTCCATTCCCCTCTATGGTTTTTCATTTGTCCCATTCGTTGAAATATTGAATGAAACTAAGGACGACAGACGTTTGGTTGATGTACTAGGTGTTGTTACTGGGAAAGGTAATCTGATTGAGTTCAAGAAAGAGGGAAAGCCATGCAACTATGTTGTCATAGAGTTGGAAAATATTGAGGGAGGTCTTAAACTTAGGTGTACTTTATGGGAGGACTATGCTTTTATGTTTTTGAAACATTTGGAAGACCATCCATCTGAGTCCTATGTTGTTGTTCTTCAATTTGCAAAAATGAAAAATTTAAAGAATTCTGTTTTTGTAACAATTGGGACTGTTAAGGACATTGAGTCTGAATATAACTGGTGCTATCGTGCCTGTAAGAAATGTTCTCTTGGTTTGAAGTTGGATGGGTCTATGTTCTATTGTAAAAAATGTGTCACTCATTATTCAACTTTTGTGACAAGATATTCTATTCAGCTTCGTGTAGTGGGTGAGACAGATTCTGCATCTTTTATCTTATTTGATAAAGAAGCCTCAAATTTCCTGAAAATTCCTGCATATGAACTTCGCACTTCATATATTGCCAAGGGTGGAGATAAGAATAGGCATCCCGAAGAGATTGATTCCTTAAAGATAAGAAATTCCTTTTTAAAGTGCAAGTTAAGATTCAAGATATGGAGTCAATTGTTCCTTATGTCATTAGTATTTCAAGGCTTTGTTTTGAAGAACATTATAGCTTCCTTTGAAAAGAAATACCAAATTGAAGAGGTAGCATTAATTCAAGACAACTCTGAACTTTTGAGTCAGTTTACTGAGTCCTCAGATCTGTTGAAGTATTTTCTAATCTCATTTGTTATGGAAATTAGATACTCCAAGTCCCCTTTTACCGACTGGAAAAACGACATCGAATATGGATTCAAGTGTTATAAAGACCATAGTTCGCGTTGTGTTCATGGTGATGAACAATCTGCTAAGAAGCTGAGGAAAGTTATCAAGGAAGAGAAGAATTAG 1353 0.3607 MASRYDLIRNVNGGSEHKIWRIKVRVIRLWRSSYFKDNNNKPMIELVVLDEQGGRIQCTVKSIHVYLFENSINEGNVYMLENLSVALNSGKYKPTMHEFRMFFKRETRVTLVEDSSIPLYGFSFVPFVEILNETKDDRRLVDVLGVVTGKGNLIEFKKEGKPCNYVVIELENIEGGLKLRCTLWEDYAFMFLKHLEDHPSESYVVVLQFAKMKNLKNSVFVTIGTVKDIESEYNWCYRACKKCSLGLKLDGSMFYCKKCVTHYSTFVTRYSIQLRVVGETDSASFILFDKEASNFLKIPAYELRTSYIAKGGDKNRHPEEIDSLKIRNSFLKCKLRFKIWSQLFLMSLVFQGFVLKNIIASFEKKYQIEEVALIQDNSELLSQFTESSDLLKYFLISFVMEIRYSKSPFTDWKNDIEYGFKCYKDHSSRCVHGDEQSAKKLRKVIKEEKN 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi22g00067 450 SUPERFAMILY Nucleic acid-binding proteins 17 115 IPR012340 -
Sebi22g00067 450 SUPERFAMILY Nucleic acid-binding proteins 214 340 IPR012340 -
Sebi22g00067 450 SUPERFAMILY Nucleic acid-binding proteins 122 231 IPR012340 -
Sebi22g00067 450 CDD RPA1_DBD_A_like 21 109 - -
Sebi22g00067 450 Gene3D - 201 357 IPR012340 -
Sebi22g00067 450 Gene3D - 8 115 IPR012340 -
Sebi22g00067 450 Pfam Domain of unknown function DUF223 45 136 IPR003871 -
Sebi22g00067 450 Pfam Replication factor-A C terminal domain 220 338 IPR013955 -
Sebi22g00067 450 PANTHER OS03G0429900 PROTEIN 219 298 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi22g00067 Sebi-Chr22 1923210 1925769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi22g00067 20 227 Core DNA Replication Machinery Family AT2G06510 25.463 1.30e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi22g00067 - - aip:110264975 278.485