Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi22g00013 ATGCCAGGCTGCAGAATCAAAGCTGAAAATCTATTTGCTATATGGAGTTTTGATGGCAAAATGGTGTATGAGAATATTATTGAAGCCACAGAAGAGTTTGACAACAAATATCTCATTGGGGTTGGAGGGCAGGGAAGTGTTTACAGAGCAAAGTTGCATACAGGACAAGTTGTTGCTGTGAAGAAACTTCATTCAACACCAAATGGATTAGAAAGGTCCAATCTAAAAGCTTTCACAAGAGAGATCCAAGCTTTGACAGAAATTCGACATCGTAACATTGTGGAGGAGATTTTGAAAGATGATCAACAAGCAATTGCATTTGATTGGAATAGGAGGCTGAATGTCATTAAAGATGTGGCTAATGCTTTATGCTATATGCACCATGATTGTTCACCTCCAATTGTTCATCGAGATATATCAAGCAAGAATGTTCTGTTGAATCTGGAATATGTAGCTCATGTCTCAGACTTTGGAACAGCCAAGCTTCTGAATCCAAATTCAGCCAACTGGACCTCATTTGCAGGCACCTTTGGATATGCTGCTCCAGTAGCATTGGAAATACTTTTTGGGAAGCACCCTGGAGATGTTATATCTTCCTTGCTATCATCTTCATGGACTGTAGTGGATGATATTATGCCATTGATGGATAAGTACTTGGACCAACGTCTCCCTCATCCCACAAATCCTATTGTTAAGGAGTTGGTATCAATTGTAAGGATGACAATTGCTTGCTGA 735 0.3973 MPGCRIKAENLFAIWSFDGKMVYENIIEATEEFDNKYLIGVGGQGSVYRAKLHTGQVVAVKKLHSTPNGLERSNLKAFTREIQALTEIRHRNIVEEILKDDQQAIAFDWNRRLNVIKDVANALCYMHHDCSPPIVHRDISSKNVLLNLEYVAHVSDFGTAKLLNPNSANWTSFAGTFGYAAPVALEILFGKHPGDVISSLLSSSWTVVDDIMPLMDKYLDQRLPHPTNPIVKELVSIVRMTIAC 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi22g00013 244 ProSitePatterns Tyrosine protein kinases specific active-site signature. 134 146 IPR008266 GO:0004672|GO:0006468
Sebi22g00013 244 Gene3D Phosphorylase Kinase; domain 1 5 94 - -
Sebi22g00013 244 FunFam Leucine-rich repeat receptor protein kinase MSP1 2 97 - -
Sebi22g00013 244 PANTHER LEUCINE RICH REPEAT KINASE 2 8 244 - -
Sebi22g00013 244 SUPERFAMILY Protein kinase-like (PK-like) 16 197 IPR011009 -
Sebi22g00013 244 ProSiteProfiles Protein kinase domain profile. 33 244 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi22g00013 244 Pfam Protein kinase domain 106 185 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi22g00013 244 Pfam Protein kinase domain 35 95 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi22g00013 244 Gene3D Transferase(Phosphotransferase) domain 1 95 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi22g00013 Sebi-Chr22 406736 407746 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi22g00013 12 185 Receptor kinase-like Gene Family AT4G08850 50.500 7.99e-57 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi22g00013 Pkinase 7.3e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi22g00013 - - gmx:100787487 340.117