Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi229g00022 ATGGCGTACCACAACCAGCACCTCTCTCAAGACCTACCTCTCCATCATTTCACAGACCAATCCAACTCCTTGCGTTCCATATTACCAGACCAACTACCCTCCTCACCCGACCCTAACTCCAAACCAACCTCCGATCCAAACCACCACCACCCTCTCCAAACCGCACCCAATTGGCTCAACAACGCTCTCCTTCGCACTCACTACACCGACAACAACGACGACGCCACCGTTAACGCTACCAACAACGCCTCCAATTTCCTCAACCTCCACACGGCCTCAGACTCCTCCGCCGTCGCTGGCACTGCAAACCAAACCTCCGGCCAATGGCTCTCCCGCCCGATCCTCCACCGGAACCACAGCGAGGTCATCGATGACGTCGCCGCCGCTGCCGTCGCCGGAGACTCTATCGTCGCCGTCGGGACAGCAGCCTCGTTGTCGCACGAATCCACCGATTTGAAGGGCGACAAGGGCGAGGCGGTGGTCGGAGACGTCGACGGAGGCGCCGGCGGGCTGGTGAACTGGCAGATTGGGAGGTGCAAGGCGGAGATTCTGGCGCATCCGCTGTATGAGCAGCTTCTGTCGGCACACGTGGCGTGCTTGCGGATCGCCACGCCGGTGGACCAGTTGCCGAGGATTGACGCTCAGTTGGCGCAGTCTCAGAATGTGGTTGCCAAGTACTCAGCGTTTGGACATGGAGCTCAGAACATGGGTGGGGATGACAAAGAACTAGACCAGTTCATGTCGCACTATGTTTTGTTGCTTTGTTCCTTCAAAGAACAATTGCAGCAACATGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTAACAGGAGTTTCACCTGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAAGATGATCAAGTAGATAGTGATGCCAATCTGTTTGATGGTAGTTTGGATGGGTCAGATAACATGGGATTTGGCCCTCTTATTCCTACAGAGAATGAGAGGTCCCTCATGGAGCGAGTGAGACAGGAATTAAAGCATGAATTGAAACATGGTTACAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGGCGAGCTGGGAAACTTCCTGGTGACACAACCTCTGTCCTTAAAGCTTGGTGGCAATCACATGCTAAGTGGCCTTACCCTACAGAGGAAGATAAGGCAAGGTTGGTGCAGGAAACTGGTTTGCAATTAAAGCAGATTAATAATTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCTACTGTCTTGAAGAGCAAGCGCAAAAGGTATTCTTATGAAAACTAG 1344 0.5179 MAYHNQHLSQDLPLHHFTDQSNSLRSILPDQLPSSPDPNSKPTSDPNHHHPLQTAPNWLNNALLRTHYTDNNDDATVNATNNASNFLNLHTASDSSAVAGTANQTSGQWLSRPILHRNHSEVIDDVAAAAVAGDSIVAVGTAASLSHESTDLKGDKGEAVVGDVDGGAGGLVNWQIGRCKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGHGAQNMGGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSLDGSDNMGFGPLIPTENERSLMERVRQELKHELKHGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRYSYEN 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi229g00022 447 MobiDBLite consensus disorder prediction 26 55 - -
Sebi229g00022 447 SUPERFAMILY Homeodomain-like 367 431 IPR009057 -
Sebi229g00022 447 MobiDBLite consensus disorder prediction 41 55 - -
Sebi229g00022 447 FunFam homeobox protein knotted-1-like 3 isoform X1 366 427 - -
Sebi229g00022 447 Pfam Homeobox KN domain 385 424 IPR008422 GO:0003677|GO:0006355
Sebi229g00022 447 SMART KNOX2_2 233 288 IPR005541 GO:0003677|GO:0005634
Sebi229g00022 447 SMART KNOX1_2 177 221 IPR005540 GO:0003677|GO:0005634
Sebi229g00022 447 MobiDBLite consensus disorder prediction 428 447 - -
Sebi229g00022 447 Pfam KNOX2 domain 238 287 IPR005541 GO:0003677|GO:0005634
Sebi229g00022 447 SMART HOX_1 367 432 IPR001356 GO:0003677
Sebi229g00022 447 CDD homeodomain 368 429 IPR001356 GO:0003677
Sebi229g00022 447 Pfam ELK domain 345 366 IPR005539 GO:0003677
Sebi229g00022 447 Gene3D - 366 427 - -
Sebi229g00022 447 SMART ELK_2 345 366 IPR005539 GO:0003677
Sebi229g00022 447 ProSiteProfiles 'Homeobox' domain profile. 365 428 IPR001356 GO:0003677
Sebi229g00022 447 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 90 428 - -
Sebi229g00022 447 Pfam KNOX1 domain 180 220 IPR005540 GO:0003677|GO:0005634
Sebi229g00022 447 ProSiteProfiles ELK domain profile. 345 365 IPR005539 GO:0003677
Sebi229g00022 447 MobiDBLite consensus disorder prediction 287 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi229g00022 Sebi-Chr229 843419 847058 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi229g00022 1 442 Homeobox Transcription Factor Family AT5G25220 66.594 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Sebi229g00022 KNOX2 2.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi229g00022 - - qsa:O6P43_015734 686.026