Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi229g00013 ATGGATTCACACAAGAAAATGGTAATAGCTTTTGCTGTAGCCAGCACTGCACTTGGTGCTGTCATTTTGTGTGTGTTATGCTTCTGGATTTATTATACCAAGAGTCCTTCAAAACCCAACAGGAAAAACGTTCAAAGCTCAGATGCTGAGAAAGGGCTTGCTTTAGCTCCATTTTTGAGTAAATTCAGCTCTGTGAAGATGGTTGGTAAGAAAGGGTGTGTCCCAATAATTGATTACAAGCAATTAGAAAAGGCTACAGGGAATTTCAAGGAAAGTAACATCTTGGGTGAGGGTGGTTTTGGATGTGTCTACAAGGCTCGGTTGGATGATAACTTGGATGTTGCTGTCAAGAAACTGCACTGTGAAAGTCACCATGCTGAGAGAGAATTTGAGAATGAGGTGGATTTGTTGAGTAAAATTCAGCATCCAAATGTAATTTCTCTACTGGGTTGTAGCAGTAATGAGGATACGAGGTTTATTGTTTATGAGTTGATGCAAAATGGATCATTGGAAACTCAGTTACATGGACCTTCTCGTGGCTCAGCATTGACTTGGCACATGAGGATGAAGATTGCTCTTGATACAGCAAGAGGTTTAAAATATCTGCATGAGCACTGTTACCCTCCAGTGATCCATAGAGATCTGAAATCTTCTAATATTCTTTTAGATGCAAACTTCAATGCCAAGCTTTCTGATTTTGGTCTTGCCATAACCGATGGGTCCCAAAACAAGAATAACATCAAGCTTTCAGGCACCTTGGGGTACGTAGCCCCAGAGTATCTTTTAGATGGTAAATTGACTGATAAAAGTGATGTCTATGCATTTGGAGTTGTGCTTCTGGAGCTTCTATTAGGAAGGAAGCCTGTAGAAAAACTGGCACCAGCTCAATGCCAATCTATTGTCACATGGGCCATGCCACAGCTCACAGACAGATCCAAGCTTCCAAACATTTTGGATCCTGTGATTAGGAATACGATGGATCCCAAGCACTTATACCAGGTTGCTGCGGTAGCAGTGCTATGTGTACAACCAGAACCATGTTACCGTCCACTGATTGCAGATGTTCTCCACTCACTCATCCCTCTTGTACCTGTTGAGCTTGGAGGAACACTGCGAGTGTCACAAGTAGTCACACAGCAAGTCTTACATGTTGATCCGCCTGTGAATTCTAGTCAATGA 1179 0.4224 MDSHKKMVIAFAVASTALGAVILCVLCFWIYYTKSPSKPNRKNVQSSDAEKGLALAPFLSKFSSVKMVGKKGCVPIIDYKQLEKATGNFKESNILGEGGFGCVYKARLDDNLDVAVKKLHCESHHAEREFENEVDLLSKIQHPNVISLLGCSSNEDTRFIVYELMQNGSLETQLHGPSRGSALTWHMRMKIALDTARGLKYLHEHCYPPVIHRDLKSSNILLDANFNAKLSDFGLAITDGSQNKNNIKLSGTLGYVAPEYLLDGKLTDKSDVYAFGVVLLELLLGRKPVEKLAPAQCQSIVTWAMPQLTDRSKLPNILDPVIRNTMDPKHLYQVAAVAVLCVQPEPCYRPLIADVLHSLIPLVPVELGGTLRVSQVVTQQVLHVDPPVNSSQ 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi229g00013 392 FunFam Protein kinase superfamily protein 56 164 - -
Sebi229g00013 392 ProSitePatterns Protein kinases ATP-binding region signature. 95 118 IPR017441 GO:0005524
Sebi229g00013 392 Pfam Protein tyrosine and serine/threonine kinase 92 321 IPR001245 GO:0004672|GO:0006468
Sebi229g00013 392 SUPERFAMILY Protein kinase-like (PK-like) 70 359 IPR011009 -
Sebi229g00013 392 SMART serkin_6 89 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi229g00013 392 CDD STKc_IRAK 95 362 - -
Sebi229g00013 392 ProSitePatterns Serine/Threonine protein kinases active-site signature. 210 222 IPR008271 GO:0004672|GO:0006468
Sebi229g00013 392 ProSiteProfiles Protein kinase domain profile. 89 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi229g00013 392 Gene3D Transferase(Phosphotransferase) domain 1 165 364 - -
Sebi229g00013 392 PANTHER OS01G0750732 PROTEIN 8 363 - -
Sebi229g00013 392 Gene3D Phosphorylase Kinase; domain 1 56 164 - -
Sebi229g00013 392 FunFam probable receptor-like protein kinase At1g80640 165 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi229g00013 Sebi-Chr229 391590 394231 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi229g00013 4 363 Receptor kinase-like Gene Family AT3G58690 43.989 6.60e-101 303
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Sebi229g00013 PK_Tyr_Ser-Thr 5.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi229g00013 - - gmx:100785380 698.353