Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi227g00090 ATGGAGCTTCCAAATCAAGCACAAGAAGGATCTTCTTCTCAGAAGAAAATGGGAAGAGGGAAAATTGAAATCAAGCGGATCGAGAACACTACCAATAGGCAAGTCACCTTCTGCAAACGCCGCAACGGTTTGCTGAAAAAAGCTTATGAATTATCTGTTCTGTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCAACCCGTGGCCGCTTGTATGAGTATGCCAACAACAGGTTTTTCATCCTCTTTTTCAACCTCCAAATCCTTAAGCTTCTTATTTAG 279 0.4194 MELPNQAQEGSSSQKKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSTRGRLYEYANNRFFILFFNLQILKLLI 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi227g00090 92 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Sebi227g00090 92 MobiDBLite consensus disorder prediction 1 21 - -
Sebi227g00090 92 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Sebi227g00090 92 MobiDBLite consensus disorder prediction 1 15 - -
Sebi227g00090 92 CDD MADS_MEF2_like 18 78 IPR033896 GO:0000977|GO:0045944
Sebi227g00090 92 PANTHER SERUM RESPONSE FACTOR HOMOLOG 17 76 - -
Sebi227g00090 92 FunFam MADS-box transcription factor 21 29 82 - -
Sebi227g00090 92 Gene3D - 29 82 IPR036879 GO:0003677|GO:0046983
Sebi227g00090 92 SUPERFAMILY SRF-like 17 77 IPR036879 GO:0003677|GO:0046983
Sebi227g00090 92 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Sebi227g00090 92 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Sebi227g00090 92 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Sebi227g00090 92 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Sebi227g00090 92 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi227g00090 Sebi-Chr227 1251478 1251756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi227g00090 8 76 MADS-box Gene Family AT3G58780 86.486 6.46e-40 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi227g00090 SRF-TF 4.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi227g00090 K09264 - pvu:PHAVU_006G034400g 148.288