Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi227g00088 ATGAGGACTGTTCTCAAGGTTGTAGACAATTCTGGGGCTAAAAAGGTGATGTGCATACAGGCACTGAAAGGGAAGAAAGGGGCAAGATTAGGTGACACAATAATAGCATCAGTGAAGGAAGCCCATCCTAATGGAAAAGTGAAGAAAGGAAAGGTTGTATATGGGGTAGTTGTGCGCGCAGCAATGCAAAAGGGAAGATGTGATGGCAGTGAGGTCAAGTTTGATGACAATGCTGTGGTGCTTGTTGACAAGCAAGGCCAGCCTATTGGGACCAGAGTTTTTGGGCCAGTGCCTCATGAGCTGAGGCAGAAGAAGCATGTCAAGATTCTTACCTTGGCAGGGCATATTGCATAA 354 0.4633 MRTVLKVVDNSGAKKVMCIQALKGKKGARLGDTIIASVKEAHPNGKVKKGKVVYGVVVRAAMQKGRCDGSEVKFDDNAVVLVDKQGQPIGTRVFGPVPHELRQKKHVKILTLAGHIA 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi227g00088 117 Pfam Ribosomal protein L14p/L23e 1 116 IPR000218 GO:0003735|GO:0005840|GO:0006412
Sebi227g00088 117 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 116 IPR000218 GO:0003735|GO:0005840|GO:0006412
Sebi227g00088 117 Hamap 50S ribosomal protein L14 [rplN]. 1 117 IPR000218 GO:0003735|GO:0005840|GO:0006412
Sebi227g00088 117 ProSitePatterns Ribosomal protein L14 signature. 55 81 IPR019972 -
Sebi227g00088 117 SUPERFAMILY Ribosomal protein L14 2 116 IPR036853 GO:0003735|GO:0005840|GO:0006412
Sebi227g00088 117 Gene3D Ribosomal protein L14 1 117 IPR036853 GO:0003735|GO:0005840|GO:0006412
Sebi227g00088 117 SMART Ribosomal_L14_2 1 117 IPR000218 GO:0003735|GO:0005840|GO:0006412
Sebi227g00088 117 FunFam 50S ribosomal protein HLP, mitochondrial-like 1 117 - -
Sebi227g00088 117 NCBIfam 50S ribosomal protein L14 2 116 IPR005745 GO:0003735|GO:0006412|GO:0015934
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi227g00088 Sebi-Chr227 1174132 1174485 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi227g00088 9 100 Cytoplasmic Ribosomal Protein Gene Family AT3G04400 36.364 2.64e-09 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi227g00088 K02874 - gmx:100818301 215.312