Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi227g00082 ATGGAAACTGAAAAGTCTAATATTTTGAAGGCTGAAGAACTTAAAACCCTTGCCAATGAAGCATTCAAGGCTCGGAAATATGCTCAAGCTATTGATCTATATACACAAGCAATTGAGCTAAATAATCAAAATGCAGTTTACTTGGCTAATCGTGCCTTTGCCCATATTCGGCTTGAGGAATATGGTAGTGCAATACTAGATGCCACAAAGGCTATTGAAATTGATCCTAAATATTCAAAGGGTTATTACAGGCGAGGTGCTGCTCATCTTGGGCTGGGAAAATTCAAGGAAGCACTGAAAGATTTTCAACAGGTCAAGAAAATGTGTCCAAATGATCCTGATGCAACAAAGAAATTGAAGGAATGTGAAAAAGCAGTTATGAAACTTAAATTTGAGGAAGCTATTGCTGTACCAGAATCTCAAAGGCGTTCAATAGCTGAATCCATAGATTTCCATTCAATAGGAAAGGGCCGCAATTCTTCGGTGCCAACCGAAGTGGCCATAGCAGCAGTGACAGTAGCAGTTATGGCAGTGGTGGTGATGTTGTTCAGGACATCAAAGACCACAATAGTAGCTGCAATTGTGGTTGGTTTGCTGTTGCTCCTTGGGGCATGTTGGTGGAGTGGCCGCAATACTGATGTGGAGCCACAATACTCAGGAGCAAGGTTAGAGGGGGATGTTGTTACTTTGGATTTTGTAAAGAAAATGATGGATGATTTCAAGAATCAGAAGTGCTTGCATAAACGGTATGCATTCCAGATTGTATTGCAAACAAGAGAGATGCTGCAAGCTTTGCCTTCTCTTGTTGATATAACTGTTCCTGATGGCAAACATTTTACTGTTTGTGGTGATGTGCATGGCCAGTACTATGATCTTTTAAATATATTTGAGCTCAATGGGCTTCCTTCAGAAGAGAATCCGTATCTATTTAATGGTGATTTTGTGGATAGAGGATCTTTTTCTTTGGAAGTCATCCTCACTTTGTTTGCATTTAAGTGCATGTCTCCATCAGCCATATATCTAGCTAGAGGAAATCACGAGAGCAAGAGCATGAACAAAATATATGGTTTTGAGGGTGAAGTGCGTTCAAAGTTGAGTGAAACATTTGTTGAACTATTTGCGGAAGTATTCTGCTGTTTACCTTTGGCTCATGTGATAAATGAGAAAATTTTTGTAGTCCATGGAGGTCTTTTTAGTGTTGATGGGGTCAAACTCTCTGACATCCGATCAATTAATCGGTTTTGCGAACCTCCTGAAGAAGGGTTGATGTGTGAATTGCTATGGAGTGATCCACAACCTCTCCCTGGAAGAGGCCCAAGCAAGCGTGGTGTAGGCCTTTCTTTCGGTGCAGATGTGACAAAAAGTGACCTCATACAATTTACCAATTTCTCAGACTTAGTTGTGCGATCTCATGAAGTAAAGGATGAGGGGTATGAGATTGAACATGATGGTAAACTCATAACTGTGTTTTCTGCACCAAATTACTGTGACCAGATGGGCAACAAAGGTGCCTTTATTCGATTCGAAGCACCTGATTTGAAACCTAACATTGTCACATTCTCAGCAGTGCCGCACCCTGATGTCAAGCCAATGGCTTATGCAAACAACTTCCTCCGAATGTTCTCATAA 1629 0.4088 METEKSNILKAEELKTLANEAFKARKYAQAIDLYTQAIELNNQNAVYLANRAFAHIRLEEYGSAILDATKAIEIDPKYSKGYYRRGAAHLGLGKFKEALKDFQQVKKMCPNDPDATKKLKECEKAVMKLKFEEAIAVPESQRRSIAESIDFHSIGKGRNSSVPTEVAIAAVTVAVMAVVVMLFRTSKTTIVAAIVVGLLLLLGACWWSGRNTDVEPQYSGARLEGDVVTLDFVKKMMDDFKNQKCLHKRYAFQIVLQTREMLQALPSLVDITVPDGKHFTVCGDVHGQYYDLLNIFELNGLPSEENPYLFNGDFVDRGSFSLEVILTLFAFKCMSPSAIYLARGNHESKSMNKIYGFEGEVRSKLSETFVELFAEVFCCLPLAHVINEKIFVVHGGLFSVDGVKLSDIRSINRFCEPPEEGLMCELLWSDPQPLPGRGPSKRGVGLSFGADVTKSDLIQFTNFSDLVVRSHEVKDEGYEIEHDGKLITVFSAPNYCDQMGNKGAFIRFEAPDLKPNIVTFSAVPHPDVKPMAYANNFLRMFS 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi227g00082 542 Gene3D Tetratricopeptide repeat domain 2 159 IPR011990 GO:0005515
Sebi227g00082 542 Pfam Tetratricopeptide repeat 17 78 - -
Sebi227g00082 542 FunFam Serine/threonine-protein phosphatase 5 204 541 - -
Sebi227g00082 542 Pfam Calcineurin-like phosphoesterase 278 473 IPR004843 GO:0016787
Sebi227g00082 542 SMART tpr_5 79 112 IPR019734 GO:0005515
Sebi227g00082 542 SMART tpr_5 45 78 IPR019734 GO:0005515
Sebi227g00082 542 SMART tpr_5 11 44 IPR019734 GO:0005515
Sebi227g00082 542 ProSiteProfiles TPR repeat profile. 79 112 IPR019734 GO:0005515
Sebi227g00082 542 FunFam Serine/threonine-protein phosphatase 5 1 138 - -
Sebi227g00082 542 SUPERFAMILY TPR-like 10 137 IPR011990 GO:0005515
Sebi227g00082 542 CDD MPP_PP5_C 218 535 IPR041753 -
Sebi227g00082 542 PIRSF PPPtase_5 1 542 - -
Sebi227g00082 542 ProSiteProfiles TPR repeat profile. 11 44 IPR019734 GO:0005515
Sebi227g00082 542 PRINTS Serine/threonine phosphatase family signature 405 432 IPR006186 GO:0016787
Sebi227g00082 542 PRINTS Serine/threonine phosphatase family signature 278 305 IPR006186 GO:0016787
Sebi227g00082 542 PRINTS Serine/threonine phosphatase family signature 341 365 IPR006186 GO:0016787
Sebi227g00082 542 PRINTS Serine/threonine phosphatase family signature 463 483 IPR006186 GO:0016787
Sebi227g00082 542 PRINTS Serine/threonine phosphatase family signature 375 401 IPR006186 GO:0016787
Sebi227g00082 542 PRINTS Serine/threonine phosphatase family signature 308 335 IPR006186 GO:0016787
Sebi227g00082 542 PRINTS Serine/threonine phosphatase family signature 485 501 IPR006186 GO:0016787
Sebi227g00082 542 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE 5-RELATED 43 535 - -
Sebi227g00082 542 Pfam PPP5 TPR repeat region 211 270 IPR013235 -
Sebi227g00082 542 SUPERFAMILY Metallo-dependent phosphatases 227 536 IPR029052 -
Sebi227g00082 542 Gene3D - 206 541 IPR029052 -
Sebi227g00082 542 Pfam Tetratricopeptide repeat 80 112 IPR001440 GO:0005515
Sebi227g00082 542 SMART pp2a_7 246 524 IPR006186 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi227g00082 Sebi-Chr227 1095461 1103772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi227g00082 253 460 Calmodulin-binding Proteins AT5G63870 34.156 5.09e-36 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi227g00082 K04460 - gmx:100820099 981.089