Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi227g00034 ATGGGTAGTTGTCTAAGTAAAGGTAAAGACTCAGAGCCAGAGCACAATGGTTATAGATATACTGGGTCTGTTGGTGTGCAAAACCAGAAGACCCATGAACCCTTGGTCAACCAATCAAGGTTACCTGCTAATCAACCTTACCAGTTACCTGAAAAACAAGCTGCATCCACTCAGACAGTGCCTTGGAAGCCTTCTGGTCCTGCCCCAAGTCCAAAACCTGTTAAGCAAGATTCAATCCTTGGGAATCAATTTGAGGATGTGAGACAGTTCTATACACTTGGGAAAGAATTGGGTAGAGGGCAATTTGGGGTAACACATCTATGCACTGAGAATTCAACTGGGATGCTGTATGCTTGCAAGTCAATTTCAAAGAGGAAACTTGTTAGGAAATCTGATAAGGAGGATATAAAGAGGGAGATTCAGATCATGCAGCATTTGAGTGGTCAACCCAACATTGTTGAATTCAAAGGTGCTTATGAGGATAGGCATTCGGTTCATGTTGTGATGGAGTTATGTGCAGGTGGTGAACTTTTTGATAGGATTATTGCAAAGGGGCATTACAGTGAAAGGGCTGCTGCTTCAATATGCAGACAAATTGTTAATGTTGTTCATATCTGCCATTTCATGGGTGTGATGCATAGGGATCTAAAGCCAGAGAATTTCTTGTTATCTAGTAAGGATGAAAATGCACTTCTCAAGGCAACAGATTTTGGCTTGTCAGTTTTCATTGAAGAAGGAAAGGTGTATCGGGATATAGTTGGCAGTGCTTATTATGTTGCTCCAGAAGTTCTACGGCGCAGATGTGGGAAGGAAATAGATATATGGAGTGCAGGAGTAATATTGTATATCTTACTTAGTGGTGTCCCTCCATTTTGGGCTGAGACTGAAAAGGGAATTTTTGATGCCATATTGGAAGGTCATATTGATTTTGAAAGTCAACCATGGCCTCAAATATCAGACAGTGCCAAAGACCTTGTTCGTAAGATGCTCATACAGGATCCAAAGAAACGCATTACTTCTGCTCAGGTTCTAGAGCACCCATGGATTAAAGATGGAAATGCTCCTGACAAGCCAATAGACAGTGCAGTCCTTTCCAGAATGAAGCAATTCAGAGCTATGAATAAACTAAAGAAACTTGCCCTGAAGGTCATTGCTGAGAATATGTCTGCAGAAGAGATCCAAGGGCTGAAGGCAATGTATATTACAAGAGATGAACTGGAAACAGCCATGAAAGAATATGGTATGGGTGATGAAGCCACAATCAAGGAAATTATATCTGAAGTTGATACAATTATATCTGAAGTGGATACAGATAATGATGGTAGAATCAACTTTGAAGAATTCTGTGCAATGATGAGGAGTGGAAACCAACCACAAGGCAAGCTATTTTAA 1392 0.408 MGSCLSKGKDSEPEHNGYRYTGSVGVQNQKTHEPLVNQSRLPANQPYQLPEKQAASTQTVPWKPSGPAPSPKPVKQDSILGNQFEDVRQFYTLGKELGRGQFGVTHLCTENSTGMLYACKSISKRKLVRKSDKEDIKREIQIMQHLSGQPNIVEFKGAYEDRHSVHVVMELCAGGELFDRIIAKGHYSERAAASICRQIVNVVHICHFMGVMHRDLKPENFLLSSKDENALLKATDFGLSVFIEEGKVYRDIVGSAYYVAPEVLRRRCGKEIDIWSAGVILYILLSGVPPFWAETEKGIFDAILEGHIDFESQPWPQISDSAKDLVRKMLIQDPKKRITSAQVLEHPWIKDGNAPDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENMSAEEIQGLKAMYITRDELETAMKEYGMGDEATIKEIISEVDTIISEVDTDNDGRINFEEFCAMMRSGNQPQGKLF 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi227g00034 463 SUPERFAMILY Protein kinase-like (PK-like) 90 370 IPR011009 -
Sebi227g00034 463 SUPERFAMILY EF-hand 400 453 IPR011992 -
Sebi227g00034 463 SMART efh_1 427 455 IPR002048 GO:0005509
Sebi227g00034 463 SMART serkin_6 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi227g00034 463 FunFam Calcium-dependent protein kinase 1 93 176 - -
Sebi227g00034 463 ProSitePatterns Serine/Threonine protein kinases active-site signature. 211 223 IPR008271 GO:0004672|GO:0006468
Sebi227g00034 463 Gene3D Phosphorylase Kinase; domain 1 93 176 - -
Sebi227g00034 463 CDD STKc_CAMK 90 348 - -
Sebi227g00034 463 ProSiteProfiles Protein kinase domain profile. 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi227g00034 463 Gene3D Transferase(Phosphotransferase) domain 1 177 367 - -
Sebi227g00034 463 ProSitePatterns Protein kinases ATP-binding region signature. 97 130 IPR017441 GO:0005524
Sebi227g00034 463 ProSitePatterns EF-hand calcium-binding domain. 436 448 IPR018247 -
Sebi227g00034 463 Gene3D - 389 399 - -
Sebi227g00034 463 MobiDBLite consensus disorder prediction 21 63 - -
Sebi227g00034 463 Gene3D - 400 461 - -
Sebi227g00034 463 ProSiteProfiles EF-hand calcium-binding domain profile. 423 458 IPR002048 GO:0005509
Sebi227g00034 463 Pfam EF-hand domain pair 399 453 IPR002048 GO:0005509
Sebi227g00034 463 Gene3D - 368 388 - -
Sebi227g00034 463 MobiDBLite consensus disorder prediction 1 77 - -
Sebi227g00034 463 CDD EFh 400 453 IPR002048 GO:0005509
Sebi227g00034 463 FunFam calcium-dependent protein kinase 1 177 355 - -
Sebi227g00034 463 PANTHER SERINE/THREONINE-PROTEIN KINASE 84 448 - -
Sebi227g00034 463 Pfam Protein kinase domain 91 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi227g00034 Sebi-Chr227 457650 462144 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi227g00034 400 463 EF-hand Containing Proteins AT3G20410 68.182 4.54e-20 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi227g00034 Pkinase 1.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi227g00034 K13412 - gmx:100798651 743.036