Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi226g00023 ATGTATCCAAACCAAGCCTTTTCTTCAGGATCCTATGCAGAGATGATGTCTGGGACTCCTCTGTTGCCTCATGGCTACAGTGAATCTGTAGGAGGACAAAATGAGTTGAAGTTTATCACATCTATGGGTGACTCAATGACTATGCAACCTATTGATGGCCATTCCAATGGTGCTGCTACAGGTGATCCAACATGCAACTCATATGCTGGTGCTGGAGATTCCCATGTTATTCCAAGGACACAATTGGGACTTGTAGACAGTGAGCAAAATGTACAGTGCCAAGGCTTGTCTCTTAGCCTAGGGACAGTGATGCCTTCTATTGCATCTGTCCCTGCTTTCCAATATCAGTATCCCGGCACTGGTTTCTCCTCACTAATGAGTGCTTCTATTCCAAACTTAAAAGGTACTGCATCCTTTAAAGATGATGAGACCAGCCTACATAAGGAATTGAGAAATGCTGAATGCATGACATCTTTATCTTCTGGAGGCTTTCACAACACTATCAAAAGGGAGGGTTTGTATAATCCACACCCTTCAATGTGCCTTAATGAAGGCCAATCTGATCCATCCTTACATGGATCACCAGGTTTTCCCAATAATGTCCTAAACTCCCAATATCTTAAGGCAGCACAGGAATTGCTAGATGAAATAGTTAATGTCAGAAAGGCTTTGAAGCAAACTGGATTGGAAAAACAACAAAGTTTCCGTGACATTGGTTTAGATGGCTCCAAAGATTCTGATGGAAAATCTACCAGTCAATCTATGCAAATATCTTCAGGCCCCAATGGTTCTACTGCTAACTCTTCGTGTGAACTATCTCCTGCAGAACGACAGCATTTATTGGACAAGAAGACAAAACTTTTGTCCATGTTGGATGAGGTAGACAAAAGATACAGACAGTACTGCCATCAGATGCAGATTGTGGTGTCATCTTTTGATATGATTGCTGGGTGTGGATCAGCTGAACCATACACTGCACTTGCTTTGCGCACAATTTCTCGCCATTTTCGCTGTTTGCGTGATGCTATTAGTGGCCAAATTCAAGTGACTCAAAGAAGCCTTGGAGAACAAGAAGGAATACCTCGCCTCCGCTATGTGGATCAGCAGCTGAGACAACAAAAAGCCCTTCAGCAGCTTGGTGTGATGCGACAAGCTTGGAGGCCTCAGAGGGGACTTCCTGAAAGCTCTGTTTCAATACTCCGTGCATGGTTGTTTGAGCATTTCCTTCATCCATATCCAAAGGATTCAGAGAAAATTATGCTGGCAAGGCAAACTGGCTTGACTAGAAACCAGGTGGCAAATTGGTTCATTAATGCGAGGGTGCGTCTTTGGAAGCCAATGGTTGAAGAAATGTACAAAGAAGAATTTGGTGATTCTGAGCTGAGCAGCAATCTTTTATCAGAAAATACACCCAAAGCTGCAAGAGAGGATGTTCAAGTGTCTGATAATAAAAGGGAAGAGTCCCAAGACAAGTTATTAACTGTTGATAGTGTTCAACAAGGCCAACTTCATGGGTTGAAGTTGGACCATGCCTCTTCTACTTCAGAATTGGATAGAGGGATCCAAAGTAGTGATCATGGAACAAATGTCATGGATTCTAGAATTGGTAAATTGCAGGGTGACCAAAGGTTTAACATGAACAATAATAATAATAGTCCCTATTCAAGTGCACCCATGCCAATCAACCATAATGGTGATGGCTGCTTAATGGCTTCTACTCCTGCCACTTATGATTTATCAGAGTTGGGTAACTTTACTGTGGGTGGCCATGTCTCCCTTGCATTGGAATTGAGGAACTCAGAAAGTGATGGATTTGGAGTGTCCAATGATGACATTCATAAAAGACGTAATCAGACATTGGCTTCTTCCCCTGATAATGATTTGCTAGATTACCATTTCACAGACCCTGGAAAGCAACAACACAAGTTTGGCAATCCTCATCTATTACATGAGTTTGTTGTCTGA 1965 0.4239 MYPNQAFSSGSYAEMMSGTPLLPHGYSESVGGQNELKFITSMGDSMTMQPIDGHSNGAATGDPTCNSYAGAGDSHVIPRTQLGLVDSEQNVQCQGLSLSLGTVMPSIASVPAFQYQYPGTGFSSLMSASIPNLKGTASFKDDETSLHKELRNAECMTSLSSGGFHNTIKREGLYNPHPSMCLNEGQSDPSLHGSPGFPNNVLNSQYLKAAQELLDEIVNVRKALKQTGLEKQQSFRDIGLDGSKDSDGKSTSQSMQISSGPNGSTANSSCELSPAERQHLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMIAGCGSAEPYTALALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSELSSNLLSENTPKAAREDVQVSDNKREESQDKLLTVDSVQQGQLHGLKLDHASSTSELDRGIQSSDHGTNVMDSRIGKLQGDQRFNMNNNNNSPYSSAPMPINHNGDGCLMASTPATYDLSELGNFTVGGHVSLALELRNSESDGFGVSNDDIHKRRNQTLASSPDNDLLDYHFTDPGKQQHKFGNPHLLHEFVV 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi226g00023 654 Gene3D - 383 460 - -
Sebi226g00023 654 MobiDBLite consensus disorder prediction 245 273 - -
Sebi226g00023 654 ProSiteProfiles 'Homeobox' domain profile. 383 446 IPR001356 GO:0003677
Sebi226g00023 654 Pfam Homeobox KN domain 403 442 IPR008422 GO:0003677|GO:0006355
Sebi226g00023 654 MobiDBLite consensus disorder prediction 459 492 - -
Sebi226g00023 654 Coils Coil 207 227 - -
Sebi226g00023 654 MobiDBLite consensus disorder prediction 460 474 - -
Sebi226g00023 654 CDD homeodomain 386 447 IPR001356 GO:0003677
Sebi226g00023 654 SUPERFAMILY Homeodomain-like 387 453 IPR009057 -
Sebi226g00023 654 Pfam Associated with HOX 201 344 IPR006563 -
Sebi226g00023 654 SMART HOX_1 386 450 IPR001356 GO:0003677
Sebi226g00023 654 MobiDBLite consensus disorder prediction 235 273 - -
Sebi226g00023 654 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 151 473 - -
Sebi226g00023 654 MobiDBLite consensus disorder prediction 475 492 - -
Sebi226g00023 654 SMART prehox3 195 345 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi226g00023 Sebi-Chr226 864173 867341 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi226g00023 196 472 Homeobox Transcription Factor Family AT2G16400 63.889 5.06e-115 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Sebi226g00023 POX 1.8e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi226g00023 - - gmx:100775682 1011.91