Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi225g00025 ATGGCTAGAACAGTTCCTCAAGAACCTCATGTGAAGCCAACCCACTTTTTCAAGATCATACCTGGTCACAGCCTTCATAGAGGAAAGCTAATGATCCCAAAAACATTTGTGGAGAAATATGGAGAAGGCTTACAAAAAACTATATTTCTTGAGCCTCCAAATGGTGCAAAATGGAAATTAAATTTGGTAAAACGTGATGGTAAAATATGGTTTGGAAAGGGTTGGAAAGAATTTGCAGAGTATCATTCTCTAGCTTCTGGGCATCTTCTGGTTTTCAGATACGAAAGAACTTCCCATTTTCATGTACACATATTTGATATGAGTGCCTTAGAGATAAACTACCCTTTCAAAAGAGTTGAAGGCAAAAGGGTCTCCAATGGTCAAGGAAATAAACCTCCAAAGAATGAAAATTCGGATGATTACAGAGCAGGTCAAAAGAGAAAAGCAAACTTGTCATTAGAATTTCTTCAACCAAGTAAAATGGGAAGCTGTAAACATGTTAAAGATGGAAATACCTTAAAATTGAAAAAGGAGGCTTTGCATCATACAGACAAAAAGTGCAAAGGAAAACAAATTATTACTGCTAGGCAAGTTACTACTCTTGACAGAGCAAGCTCTTTCAAAACTAATAATCCATCCTTCCTGATTTGCATGCATCCATCATATATCGATGGTCGTTGTTATCTGAATTTACCATCTAAGTTTGCTAAGAGACACTTTGATTTGAGCAAGAAGTGGGGAGATATCCATCTTCGCGTGTTAAATGGGAGAGTTTGGCCTGCAAGGTACTTAATCAGGCAAGTCCAAACAAGAACAAGATTTGAACTAAAGGGATGGAAGGCATTTTCCAAGGACAATAACTTGAAAGCAGAATCTCTTCAAATTAGAGAAGCTTGTCAAGGAGACAAAAAGGAAATGAGAATCATCACCACAACTACCAAATCATCACCACCAAAGAGTTTCAATTCTATCATTTGA 978 0.3712 MARTVPQEPHVKPTHFFKIIPGHSLHRGKLMIPKTFVEKYGEGLQKTIFLEPPNGAKWKLNLVKRDGKIWFGKGWKEFAEYHSLASGHLLVFRYERTSHFHVHIFDMSALEINYPFKRVEGKRVSNGQGNKPPKNENSDDYRAGQKRKANLSLEFLQPSKMGSCKHVKDGNTLKLKKEALHHTDKKCKGKQIITARQVTTLDRASSFKTNNPSFLICMHPSYIDGRCYLNLPSKFAKRHFDLSKKWGDIHLRVLNGRVWPARYLIRQVQTRTRFELKGWKAFSKDNNLKAESLQIREACQGDKKEMRIITTTTKSSPPKSFNSII 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi225g00025 325 Gene3D - 191 312 IPR015300 -
Sebi225g00025 325 ProSiteProfiles B3 DNA-binding domain profile. 214 314 IPR003340 GO:0003677
Sebi225g00025 325 SUPERFAMILY DNA-binding pseudobarrel domain 11 108 IPR015300 -
Sebi225g00025 325 CDD B3_DNA 212 290 IPR003340 GO:0003677
Sebi225g00025 325 ProSiteProfiles B3 DNA-binding domain profile. 15 108 IPR003340 GO:0003677
Sebi225g00025 325 SMART B3_2 214 312 IPR003340 GO:0003677
Sebi225g00025 325 SMART B3_2 16 108 IPR003340 GO:0003677
Sebi225g00025 325 Gene3D - 9 109 IPR015300 -
Sebi225g00025 325 MobiDBLite consensus disorder prediction 123 142 - -
Sebi225g00025 325 PANTHER B3 DOMAIN-CONTAINING 10 292 - -
Sebi225g00025 325 CDD B3_DNA 15 106 IPR003340 GO:0003677
Sebi225g00025 325 SUPERFAMILY DNA-binding pseudobarrel domain 209 290 IPR015300 -
Sebi225g00025 325 Pfam B3 DNA binding domain 214 292 IPR003340 GO:0003677
Sebi225g00025 325 Pfam B3 DNA binding domain 16 106 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi225g00025 Sebi-Chr225 948805 951677 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi225g00025 13 288 B3 DNA Binding Superfamily AT3G18990 30.818 5.20e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi225g00025 B3 8.3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi225g00025 - - lja:Lj1g3v3690290.1 403.675