Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi224g00107 ATGGGCAACTGCAACAGCGGCGGCGCCGCCACCTATTCCGGCGAGCCTCCCCAGCGCAACGGCCCCACTGTCCTCCCTACCAATTCCAACCCCTCACCCCCTCCCCCACTCCCGAAACCACAACCACCCCTCTCCTCCTCCCTCGGCCGCGTTCTCGGTCGCCCCATGGAGGACGTTCGCTCTATCTACGTCTTCGGCCGCGAGCTTGGTCGAGGCCAATTCGGCGTCACCTACTTGGTCACACACAAAGTGACGAAGGAGCAATTCGCCTGCAAATCCATCGCCACCCGCAAACTCATCAACCGCGACGACATCGACGACGTTCGCCGTGAGGTCCAGATCATGCACCACCTCACCGGCCACCGTAACATTGTGGAGCTCAAGGGTGCCTACGAGGATCGACACTCCGTTAACCTCATCATGGAGCTCTGCGCCGGCGGCGAGCTCTTCGACAGGATCATTGCCAAGGGTCACTACTCCGAGCGCGCCGCCGCTAACTCGTGCCGCCAGATCGTGACGGTGGTTCATAACTGTCACTCCATGGGAGTCATGCATAGGGACTTGAAGCCTGAGAATTTCTTGTTGCTCAGCAATGACGAGAACTCACCTCTTAAGGCCACGGATTTTGGTCTCTCTGTGTTTTTTAAGCCAGGAGATGTGTTTAAAGATCTTGTTGGGAGTGCCTACTATGTTGCTCCTGAGGTGCTGCGTAGAAGTTATGGGCCTGAAGCTGATATTTGGAGTGCTGGGGTTATATTATACATTCTGCTTTCTGGTGTCCCTCCCTTCTGGGCAGATCCTTGGCCTTCCATATCAAGTAGTGCCAAAGATCTGGTCAAGAAGATGCTACGAGCTGACCCTAAAGAACGGCTTTCAGCAGCTGAAGTACTTAATCATCCTTGGATGAGAGTAGATGGAGATGCATCTGACAAGCCTCTTGACATTGCTGTTTTAACCAGAATGAAACAATTCCGGGCAATGAACAAGCTAAAGAAAGTAGCTCTGAAGGTTATTGCTGAAAATCTTTCTGAAGAAGAGATTATTGGTTTGAAGGAAATGTTCAAATCCATGGATACAGATAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTCCCTAAACTGGGTAGCAAACTATCCGAGTCTGAAGTAAGACAGTTGATGGAAGCGATTCGTTCTCCATTTGTTGATAACTGGTACATCACAACAGAAGAGTTGAAATTTGCCCTTAAGAAGTATAATATGGGTGATGAGAAGACAATAAAGGAGATCATTGCCGAAGTTGATACAGACAATGATGGAAGAATTAACTATGATGAGTTTGTAGCCATGATGAGGAAAGGCAACCCAGACATAACCCACAGACGTCGCAAATAA 1383 0.4982 MGNCNSGGAATYSGEPPQRNGPTVLPTNSNPSPPPPLPKPQPPLSSSLGRVLGRPMEDVRSIYVFGRELGRGQFGVTYLVTHKVTKEQFACKSIATRKLINRDDIDDVRREVQIMHHLTGHRNIVELKGAYEDRHSVNLIMELCAGGELFDRIIAKGHYSERAAANSCRQIVTVVHNCHSMGVMHRDLKPENFLLLSNDENSPLKATDFGLSVFFKPGDVFKDLVGSAYYVAPEVLRRSYGPEADIWSAGVILYILLSGVPPFWADPWPSISSSAKDLVKKMLRADPKERLSAAEVLNHPWMRVDGDASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGSKLSESEVRQLMEAIRSPFVDNWYITTEELKFALKKYNMGDEKTIKEIIAEVDTDNDGRINYDEFVAMMRKGNPDITHRRRK 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi224g00107 460 ProSitePatterns Protein kinases ATP-binding region signature. 69 92 IPR017441 GO:0005524
Sebi224g00107 460 FunFam Calcium-dependent protein kinase 5 149 310 - -
Sebi224g00107 460 Gene3D Transferase(Phosphotransferase) domain 1 149 310 - -
Sebi224g00107 460 ProSiteProfiles EF-hand calcium-binding domain profile. 345 380 IPR002048 GO:0005509
Sebi224g00107 460 SUPERFAMILY EF-hand 341 448 IPR011992 -
Sebi224g00107 460 MobiDBLite consensus disorder prediction 1 48 - -
Sebi224g00107 460 PANTHER SERINE/THREONINE-PROTEIN KINASE 63 440 - -
Sebi224g00107 460 FunFam Calcium-dependent protein kinase 1 65 148 - -
Sebi224g00107 460 SMART serkin_6 63 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi224g00107 460 ProSitePatterns EF-hand calcium-binding domain. 358 370 IPR018247 -
Sebi224g00107 460 MobiDBLite consensus disorder prediction 1 26 - -
Sebi224g00107 460 Gene3D - 311 396 - -
Sebi224g00107 460 CDD EFh 350 448 IPR002048 GO:0005509
Sebi224g00107 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Sebi224g00107 460 Pfam Protein kinase domain 63 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi224g00107 460 ProSitePatterns EF-hand calcium-binding domain. 431 443 IPR018247 -
Sebi224g00107 460 CDD STKc_CAMK 63 301 - -
Sebi224g00107 460 SUPERFAMILY Protein kinase-like (PK-like) 63 303 IPR011009 -
Sebi224g00107 460 Pfam EF-hand domain pair 350 448 IPR002048 GO:0005509
Sebi224g00107 460 ProSiteProfiles Protein kinase domain profile. 63 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi224g00107 460 SMART efh_1 349 377 IPR002048 GO:0005509
Sebi224g00107 460 SMART efh_1 422 450 IPR002048 GO:0005509
Sebi224g00107 460 Gene3D Phosphorylase Kinase; domain 1 65 148 - -
Sebi224g00107 460 Gene3D - 399 460 - -
Sebi224g00107 460 MobiDBLite consensus disorder prediction 27 43 - -
Sebi224g00107 460 ProSiteProfiles EF-hand calcium-binding domain profile. 418 453 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi224g00107 Sebi-Chr224 1315034 1319264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi224g00107 49 460 EF-hand Containing Proteins AT4G23650 72.258 0.0 683
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi224g00107 Pkinase 5.8e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi224g00107 K13412 - gmx:100777096 766.918