Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi224g00097 ATGAAAGCCAGAATAGAGGTTTTGACCATGTTTAAGCAAGGACCCCACATGTCAAGAGGCAATAGGACCACGTCACTGATCCCATTTAAACCTACCCCTTCCATCAGGTGCGGGTTAAAGTTAGGGGACAGCGACGACATTCTTTGGTCAGATCTGCAAAGAACAAAAACGGCGTGGAGCCAAGTCAATGTAAATAAGGTAGCAAGAAACTTCTCGTTCCCTGCTGCTGCTGGTGGAAGTGGAAAACTCCAAATGGAATTTCTACGCATTTTATCTTCCATTTACCTATTGAGTTTGATTCTCTTACAAGGAAATGCTGAACCTCTTGAAGATAAGAAGGCTTTGCTTGACTTTGTGAACAAGTTCCCTCCTTCTAGGCCTCTAAATTGGAATGAGAGCTCTTCCATGTGTGCTACTTGGACTGGAGTTACTTGCAATGAGGATAAGTCTCGAGTAATAGCCATTCGATTACCAGGGGTTGGATTTCATGGTACCATCCCACCTGATACCATTAGCCGCCTCACAGCGCTGCAAACTTTGAGCCTCAGATCCAACGTCATAACTGGGCACTTCCCTTCTGATTTTTCCAATCTCAAAAACTTGTCTTTTCTTTACCTTCAGTTCAACAATTTGTCAGGTCCTTTGCCGGATTTCTCAGCTTGGAAGAACCTTACTGTTGTCAATTTGTCTAATAACCATTTCAATGGCACCATTCCTGTCTCCCTTTCCAATTTGACTCAGCTTGCTGGTTTGAACCTTGCAAACAACTCTCTTTCTGGTGAAATTCCTGATCTCCAGTTGTCCAGATTGCAGCTGCTGAATTTGTCTCACAACAATTTGCAGGGCACTGTGCCTAAATCTCTCCAGAGGTTTCCTGAGTCTGCATTCTCTGGGAATAACATTTCCCTTGGAATTTCCCCTGCCTTTTCTCCTGTGTCTCCACCGGCTTATGAGCCATCTTCGACTTCTAAAAAACATGGAAGGCTCAACGGAACGGCAATGCTGGGAATTATTGTTGCTGGTAGTGTTCTAGGCCTTGTAGCATTTTGTTATTTGATGTTTCTGTGCTGCTCAAGAAGAAGGGATGGAGATGATGAAGTCTTTAGTGGAAAGTTGCGGAAAGGGGAAATGTCTCCGGAAAAAGCAGTCTCAAGGAACCAGGATGCAAATAATAAATTGGCTTTCTTTGAGGGATGTAATTATGCCTTTGATTTGGAGGATTTGTTGAGGGCTTCTGCTGAGGTACTGGGAAAGGGCACATTTGGGACTGCATATAAGGCAATACTAGAGGATGCAACCACAGTGGTTGTGAAGAGGTTAAAGGAGGTAGCCGTTGGAAAGAAGGATTTTGAGCAACACATGGAGATTGTGGGGAGTCTTAAACATGAGAATGTGGCTGAGCTGAAGGCATATTATTATTCTAAAGATGAGAAACTGATGGTATATGATTACTTCAGTCAGGGGAGCGTGTCTTCTATGCTGCATGGTAAAAGAGGAGAGGACAAGGTGGCTTTAGATTGGGATACTCGGCTGAAAATAGCTTTAGGTGCTGCCAGAGGCATTGCTCGGATCCATGTTGAGAATGGTGGTAAGCTTGTACATGGCAACATCAAGTCCTCAAATATCTTTCTCAATACTAAACAATATGGTTGTGTATCTGACCTTGGCCTGGCAACCATATCAAGCACACTTGCTCTGCCCATCTCACGAGCTGCTGGTTACCGAGCACCTGAAGTTACAGACACAAGGAAAGCAGCACAACCTTCAGATGTTTACAGCTTTGGTGTGGTTTTACTAGAGCTTCTCACTGGGAAATCCCCTATCCACACAACTGGTGGTGATGAGATTATCCACCTAGTGAGGTGGGTTCATTCAGTTGTGAGAGAGGAGTGGACAGCTGAAGTGTTTGATTTAGAGTTGATGAGATTTCCAAACATAGAAGAAGAGATGGTGGAAATGTTACAGATAGCCATGTCATGTGTGGTAAGGATGCCTGATCAGAGACCTAAGATCTCTGAAGTTGTGAAGATGATAGAAAATGTGAGGCAGATTGATACAGGGACCAAGCCATCAGCTGAGAACCAACCAGAACTTAAATTATCTCAACGTGACAATGATAACTCCTCTTCAACTCCATCCCCATTCCCAAAAGGAAGTGAATGA 2163 0.4387 MKARIEVLTMFKQGPHMSRGNRTTSLIPFKPTPSIRCGLKLGDSDDILWSDLQRTKTAWSQVNVNKVARNFSFPAAAGGSGKLQMEFLRILSSIYLLSLILLQGNAEPLEDKKALLDFVNKFPPSRPLNWNESSSMCATWTGVTCNEDKSRVIAIRLPGVGFHGTIPPDTISRLTALQTLSLRSNVITGHFPSDFSNLKNLSFLYLQFNNLSGPLPDFSAWKNLTVVNLSNNHFNGTIPVSLSNLTQLAGLNLANNSLSGEIPDLQLSRLQLLNLSHNNLQGTVPKSLQRFPESAFSGNNISLGISPAFSPVSPPAYEPSSTSKKHGRLNGTAMLGIIVAGSVLGLVAFCYLMFLCCSRRRDGDDEVFSGKLRKGEMSPEKAVSRNQDANNKLAFFEGCNYAFDLEDLLRASAEVLGKGTFGTAYKAILEDATTVVVKRLKEVAVGKKDFEQHMEIVGSLKHENVAELKAYYYSKDEKLMVYDYFSQGSVSSMLHGKRGEDKVALDWDTRLKIALGAARGIARIHVENGGKLVHGNIKSSNIFLNTKQYGCVSDLGLATISSTLALPISRAAGYRAPEVTDTRKAAQPSDVYSFGVVLLELLTGKSPIHTTGGDEIIHLVRWVHSVVREEWTAEVFDLELMRFPNIEEEMVEMLQIAMSCVVRMPDQRPKISEVVKMIENVRQIDTGTKPSAENQPELKLSQRDNDNSSSTPSPFPKGSE 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi224g00097 720 Pfam Leucine rich repeat 165 211 IPR001611 GO:0005515
Sebi224g00097 720 Gene3D Phosphorylase Kinase; domain 1 375 484 - -
Sebi224g00097 720 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 485 692 - -
Sebi224g00097 720 FunFam Probable inactive receptor kinase RLK902 109 266 - -
Sebi224g00097 720 ProSiteProfiles Protein kinase domain profile. 410 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi224g00097 720 Gene3D Transferase(Phosphotransferase) domain 1 485 706 - -
Sebi224g00097 720 PANTHER OS05G0588300 PROTEIN 90 691 - -
Sebi224g00097 720 Pfam Protein kinase domain 413 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi224g00097 720 Gene3D Ribonuclease Inhibitor 110 219 IPR032675 -
Sebi224g00097 720 Pfam Leucine rich repeat N-terminal domain 110 146 IPR013210 -
Sebi224g00097 720 SUPERFAMILY Protein kinase-like (PK-like) 414 678 IPR011009 -
Sebi224g00097 720 ProSitePatterns Protein kinases ATP-binding region signature. 416 447 IPR017441 GO:0005524
Sebi224g00097 720 SUPERFAMILY L domain-like 121 291 - -
Sebi224g00097 720 MobiDBLite consensus disorder prediction 684 720 - -
Sebi224g00097 720 FunFam pollen receptor-like kinase 1 379 484 - -
Sebi224g00097 720 Gene3D Ribonuclease Inhibitor 220 310 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi224g00097 Sebi-Chr224 1178879 1182504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi224g00097 85 713 Receptor kinase-like Gene Family AT4G23740 64.907 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sebi224g00097 Pkinase 1e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi224g00097 - - gmx:100804799 1050.04