Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi224g00069 ATGGCCACTTTGCCATCTTTCTTTTTCTTCTTCATCCTAGTGGCACACACAATAACAAGTGCTGATGAGTTCAACTGTGCAATCACATCATGCGAAAACGGTGGACTTCCAATTCAATTCCCGTTTTCATTGAGACAAGCGAATCAAGGCTATCTATGTGGTTACCCAGGGTTCGACCTATCATGTACCAATACAAATAATAGCACTACCCTCAGCGAACCATTACTCACTCTTCCAGAATCCGGAGACTTCGTGGTGAAACTAATCTCCCTGGAAGACCAAAAGGTTTGGATTAATGACCCTGACAACTGCCTCCCAAAACGCATCATGCGTGACCGTGGATTAAATCTCAAAGGCTCCCCCTTCCAATTCAGCGATTATTACACTCTTGTCAATTTCTCCTTCCTCAGTTGCCCCTCCAATTTAACCTCTTCCTCTTTAGTACAACCCATCACTTGTTTAAATTCAAGCTCTTATCACAACAACCTTAGCTATTCGGTGGTAGCTATGGTGTCCGATCCTCCCTTTCCCACGCCATGGACCTCATCGTGCCACTTCATTTCCTCAGCTTCAATTCCGGTTCAATACACTCCTTGGTTGTTCTGGACTGATTATTATGCTGACATACCCTTGAAATGGGACTACCCTGATTGCGGAAATTGTGTAGCACGTGGAGGACGATGTGGCTTCCTTGGAGACCCTGCTTTTGATGTTACTTGTTATGATCTTCCCACTCAAGGTCTTTCAAGGAAAGCCAAGTATGGTGTGAGTTTGGGCCTGGGAATACCTGGGCTCCTGGGTGTAATTGGGCTTACATGGATTTTGTGCTGCAAGAAGAGCGCGCGTGATCTTCCGAGGCAAACGGGTACTGAATTGTCTACCCTAGTTGTGACGCATCCTCCTATTTTTGTCATGGGCCTTGATGGGGCCTCTATAGAAAGATATCCTAAAACCCAGCTTGGTGAAAGTGGACGGTTGCCCAGGCCCAATGATAATATTTGCTCCATTTGTCTTTGTGAATACCAGCCCAAGGAGATGTTGAGGACCATCCCAGAGTGCAATCACTATTTTCATGCGAATTGCATTGATGGATGGCTCAAGATGAATGCCACGTCTATTCGTAGTGTTCAGTACAAATTGATATCTGCGACAGAAGCAGCCCTAATCTATGTATTTTACGTCTCTGTTTTCCATCTTCAAAGTACCAAAGCCAAACAAATTTGCAATAGCTTATCATGCGGCGATATTGATATCCAGTTTCCTTTCGGATTGAAAGAAGCTAATCAAGACCGTCACTGTAGCTATTACCCCATTCCAAGCTTCCAACTTTCGTGCAACAACCGTAGCCAAACCATTCTGAGGCTCCCAAATACAGGGGAGTTAGTGGTGAAAAGCATCGATTACGAAACCCAAAGCATCGAAGTCAACGACCCTAATGAATGTCTCCCAAAACGGTTCTTGCATGATTGGAACCTCACAGGTTCACCTTTCAAGTTAAACCCCATCATTTATGGACCTTACCCTTTTAATCTCACTTTCCTTCGTTGCCCTTCTAATGTGACCAAGTCATCTGAATTCCCATTAGAACCAATTTCTTGCTTGAGCTCCAAATTAGGAGACACAAACTCCTCCTCGTCCTCGGTCATAGTTTCATGGGGACGGCCTATTTTTTCGTCGACGTTTATGTCTGAAGCATGCGAGGTGATTTCCTCGGCTTATGTTCCCCTTCCATGGAGGGAGATGCCCTCGTGGCCCTTTTGGCCTGATCTTAACAATGATGTTGGGTTGGTGTGGACCGAACCCAGATGTGAAAACTGTGCATTTAGTGGCCAAGTTTGTGGGTTCTCTAAGGATAAAAGCCTTCAAGTTGAATGTTTCCCTAGTCCATCCACCAACACAGGTATGCTTATGCCTTATTCTATGCTCTTTCTTTTTCCACTGGCCCAACCACTTTCCTTTTCAATTTTCATCCTACGGTTAAGATCAATTCCCAACAATATGCTGATGTTAACGTTTTACTCATCAATTCTTATGGTTGAGGTTATCTAA 2049 0.4441 MATLPSFFFFFILVAHTITSADEFNCAITSCENGGLPIQFPFSLRQANQGYLCGYPGFDLSCTNTNNSTTLSEPLLTLPESGDFVVKLISLEDQKVWINDPDNCLPKRIMRDRGLNLKGSPFQFSDYYTLVNFSFLSCPSNLTSSSLVQPITCLNSSSYHNNLSYSVVAMVSDPPFPTPWTSSCHFISSASIPVQYTPWLFWTDYYADIPLKWDYPDCGNCVARGGRCGFLGDPAFDVTCYDLPTQGLSRKAKYGVSLGLGIPGLLGVIGLTWILCCKKSARDLPRQTGTELSTLVVTHPPIFVMGLDGASIERYPKTQLGESGRLPRPNDNICSICLCEYQPKEMLRTIPECNHYFHANCIDGWLKMNATSIRSVQYKLISATEAALIYVFYVSVFHLQSTKAKQICNSLSCGDIDIQFPFGLKEANQDRHCSYYPIPSFQLSCNNRSQTILRLPNTGELVVKSIDYETQSIEVNDPNECLPKRFLHDWNLTGSPFKLNPIIYGPYPFNLTFLRCPSNVTKSSEFPLEPISCLSSKLGDTNSSSSSVIVSWGRPIFSSTFMSEACEVISSAYVPLPWREMPSWPFWPDLNNDVGLVWTEPRCENCAFSGQVCGFSKDKSLQVECFPSPSTNTGMLMPYSMLFLFPLAQPLSFSIFILRLRSIPNNMLMLTFYSSILMVEVI 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi224g00069 682 Pfam Wall-associated receptor kinase galacturonan-binding 30 100 IPR025287 GO:0030247
Sebi224g00069 682 Pfam Wall-associated receptor kinase galacturonan-binding 408 477 IPR025287 GO:0030247
Sebi224g00069 682 Pfam RING-like zinc finger 334 362 IPR001841 -
Sebi224g00069 682 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 7 372 IPR046948 -
Sebi224g00069 682 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 304 372 IPR013083 -
Sebi224g00069 682 SUPERFAMILY RING/U-box 329 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi224g00069 Sebi-Chr224 893941 896919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi224g00069 408 660 C3H Transcription Factor Family AT2G25410 32.567 1.23e-21 95.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi224g00069 - - lja:Lj4g3v3004070.1 525.783