Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi224g00062 ATGGAAGCGGATTTCGCGACGAATGATATGCTCACGCTCACACAGGACTCGTTTGATGCCCTCGATAACGATAATGTAGATATTGAAGGGGAAAGATGTGGAATATGCATGGACGTTGTTATTGACAGGGGAGTTCTAGATTGCTGTCAGCACTGGTTCTGTTTTGTATGCATTGACAACTGGGCAACCATCACTAATCTATGCCCACTTTGCCAGAATGAGTTTCAGTTGATCACTTGTGTTCCAGTATATGATACCATTGGAGGCAATAAAGTTGAAGAAGACTCATTCTTCAGAGATGATGACTGGTCCATCGAAGGGAAGAATAACACACTGTCATTTCCCTCCTACTACATTGATGAAAATGCAGTTATTTGCTTGGATGGCGATGGCTGCAAAGTTCGAAATGGATTGGCAACTACCGAAGGAGATTCTGGTCTTGATACATCAATTGCATGTGATTCATGTGATATATGGTTGTTCTCTTATATGACTATGAATCTATATTGTTGGATTTGTCACCTCAGTTACATGTTTGCCACTTTGCCTAGGTATCATGCCTTCTGTGTGGGATTTGATACTGAAGGTACATCTGACAGTACATGGTTATGCCCAAGATGTGTGGTTGATGGAGTTTTGAAAGGAACAGATACCAATTCAATAGAGAGGGAAACCGTGGAATGTAATCCAGATAATTGTAACAGTGAATGCCATGCTGAGGATTCCTTTTCTGGAAAAGTTTCTGTGTCTATTGCTGATGCTGGAGAGACAGCTGTTGTTGTCTCGATGGTTGACAGAAATAAATCGGTTCCAGCAACAAGTGAGAAAAGCTTTATGACTCTTGAAGTTGATGGGGATCCACTGATTGAATCATGTAATTCAATGTCAGATACAAATAATCAGCAGCAGGGGACAAAGAATACAACTATGCCACCAATCATGGAGGGAAACGAGCCGGAGCTGTCATTATCAAACAACAATATATCCTGTAACCTAACTTCTAAATCCTTCGTGCATAATGATTTAAAGAAAAGTGATGATGGAGCAAGGAATGAACTGAGTAGCTTTGATGGAACCAAGTTATTAGATGAGTCCCATGGCAAAACTAGTCCATCCAGAATTGAATCTGATTTGGGTCTTCATCTCGTTGATAATGCGGACAAGAATGAAACAAACGATCAAGCAACCGATATCTTGCGCTTGAGTCCAGAAAAAAATCTTCTGAAAGGAGATGAAATAGAAACCGATGCTTGTAAGGGCAATGCCAGAGTGACTGGTGGGAAGAGGAAGCATGTTGATTACAGTTATGAGCAAGTTCATGTAAAAGCTGATGATGGAGATGCCAAGCCTGAACTTTCAGTTGAAGTTTCACAAAAGAAAATTAGAGCATCTGGTAGTCAGATGACTGGTGCTGATGACTCGACTGATGCTCATCTTTCTGACAATGCTAAAAAAAACCCTGCCTTTCTAAAACATTCTCCAACGAAGGAGATTGTGGCATCAGATATAATGAATATAGTTAAAGGGACAAACCGTAGGCCTTCCAAGGGACTTGCTGACACTAATGCTTGTGACAAGTTAGGTGAAAAGAAAGAAAATATGGCTGGATTGAGAGTGAAAAAGATTATGAAGAGAGTTTCTGATGATGGAGAATCATCCTCAGTAGTTCAAAATTTAAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATCCTCCATAAACTTTGAGGAAAATCATTTTGATGCAAAGCTTCTTGAAGCATTTAGGGCTGCCATAGCAGGGCCAAAAACTGAACCTGTTAACAAGTTATCCCGTTCAGCTCTAAAGGCAAAGAAATCAATGTTGCAGAAAGGAAAAGTACGTGAACATCTAACAAGGAAAATTTTTGGGACTTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCTACAAAACCTGAAAAGATCGAAACTTTAAAGTCAGTTCTTGATCTACTTAGAAAAAGTTCAGAGAGCCCAGAATCAAAGCAAGATCCTGAATGTCAAGCAAAGAATCCTATTCTTTCCAGGTTGTATTTAGCAGATACATCTGTTTTCCCACGGAAGGAGGATTCCGTACTTAAAACTATTGCTAGCTCAGAGCAGACTAAACAAAATAACCCATCAGGAAAAGGACCAAATCTATCTCTTGATAACAATACTATTAAAACAACAGAGGTAAATAATCTTTTATCAAAGACCAGAGTTTGTTCATCTGAGAAAAAGGTAGATAAGAAGATTGTACATGGTCCAGCTGGTAAAGTACATTTAAGCAGTCACTCAGAAGGGACATCAGTTTCTTCCTCAGATGGTGCGAAAGTGGGCCTTAAATCTGATTCTATGAAGACTGATAAAAGAAAATGGGCATTGGAGGTTCTTGCGAGGAGAACAGCTGCTGCAAGCGGGAACACAGCAAATGAAAGTCAGGAAGACAATGCAACTCTCAAAGGAAATTATCCTTTGCTTGCCCAATTACCAACTGATATGAGACCAGTATTGGCACCTTGTCGTCACAATAAAATTCCCATATCAGTGAGGCAGACACAGCTTTACCGTCTGACAGAGCGCTTATTGAGGAACACAAATCTGCCAGTCATTCGCAGAACTGCAGATACAGAATTGGCTGTTGCAGATGCAATTAATATTGAAAAGGAGGTCGCTGACAAATCAAACAGCAAGCTTGTGTATCTGAACCTTTGTTCACAAGAGCTCTTGCATCGCACAAATAACACAAAATCCAATGTAGCCACAGATACAAGTCCACCAGCCTCATTAGCAGTTCATACTGATCAATCAGAACTAAATACTGATGATCCTTCAACTGATCCCGAAGTCCAAATAGCCCTGAAAAATGCTGGTCTGTTGTCTGATTCACCGCCTAGCAGTCCACATGAGAACAAAGAAATATGCAATGATGATATGCCGGGGCCTGATAATATACTTGAACTGGATTCTCATCCTGAGCTGGATATTTATGGTGATTTTGAGTATGATTTGGAAGATGAAGATTACATTGGTGCTAGTGTTGTGAAGGTCTCAAACCCGAAACAAGAGCAAAGTGAATCAAAAGTGAAACTTGTTTTCTCAACCATGAACTTGAAGAAAACTGATAAAGCTTTGGATGGTGCAGACTGTGAGGGGTCTGAAAACAATGAAGTGCCAGCAGATGCCTCTTGCTCACCAAATTGTCACAATGATGCAGTCTGCACGGATTCTACAATTGATGCTGAGATTGGCCAGCTTTCTGTTTCTTCTGAGCTCCTACCATGCGAGGGAGCTGTTGAGCCAGTCGATTCAGAATTTGAAGAATTATATGGTCCTGATAAGGAACCGCTTATAAAAAAATTTCCAGATGGTGAATCAAGATCATTACATGAAGAGGGCAACACAGAAATTCAAAGCGAGGCCAATGGTTGTCATAATGACAAAAAACATGTCTTGGACAAAGCAGTAAATACTTTGGAATCCAGGAATGAGAATGTAACAGAAAAGGTGTTTGTCTCTAGCATCACGGACAAATCTTCTAATATATCTGGGTCTAAAGAAAATTTCCAAAGGAAGGAAGAGAAATCTGACATCCCTGCAAAGCAGACCGACTCTGTAAATCATGTAACAAGGAAGGTCGAAGCCTACATTAAGGAACATATCAGACCACTGTGCAAGAGTGGTGTGATCACGGCTGAACAGTACAGGTGGGCTGTTGCAAAAACTACTGATAAGGTTATGAAGTATCATTGCAAATCAAAAAATGCTAATTTCCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTTGCAGAGCAGTATGCTGAGGCAGCCCAACAGGCCGAGCAGAATAGAAAAAATTGA 3903 0.4035 MEADFATNDMLTLTQDSFDALDNDNVDIEGERCGICMDVVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGGNKVEEDSFFRDDDWSIEGKNNTLSFPSYYIDENAVICLDGDGCKVRNGLATTEGDSGLDTSIACDSCDIWLFSYMTMNLYCWICHLSYMFATLPRYHAFCVGFDTEGTSDSTWLCPRCVVDGVLKGTDTNSIERETVECNPDNCNSECHAEDSFSGKVSVSIADAGETAVVVSMVDRNKSVPATSEKSFMTLEVDGDPLIESCNSMSDTNNQQQGTKNTTMPPIMEGNEPELSLSNNNISCNLTSKSFVHNDLKKSDDGARNELSSFDGTKLLDESHGKTSPSRIESDLGLHLVDNADKNETNDQATDILRLSPEKNLLKGDEIETDACKGNARVTGGKRKHVDYSYEQVHVKADDGDAKPELSVEVSQKKIRASGSQMTGADDSTDAHLSDNAKKNPAFLKHSPTKEIVASDIMNIVKGTNRRPSKGLADTNACDKLGEKKENMAGLRVKKIMKRVSDDGESSSVVQNLRKEIREAVRNKSSINFEENHFDAKLLEAFRAAIAGPKTEPVNKLSRSALKAKKSMLQKGKVREHLTRKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKSSESPESKQDPECQAKNPILSRLYLADTSVFPRKEDSVLKTIASSEQTKQNNPSGKGPNLSLDNNTIKTTEVNNLLSKTRVCSSEKKVDKKIVHGPAGKVHLSSHSEGTSVSSSDGAKVGLKSDSMKTDKRKWALEVLARRTAAASGNTANESQEDNATLKGNYPLLAQLPTDMRPVLAPCRHNKIPISVRQTQLYRLTERLLRNTNLPVIRRTADTELAVADAINIEKEVADKSNSKLVYLNLCSQELLHRTNNTKSNVATDTSPPASLAVHTDQSELNTDDPSTDPEVQIALKNAGLLSDSPPSSPHENKEICNDDMPGPDNILELDSHPELDIYGDFEYDLEDEDYIGASVVKVSNPKQEQSESKVKLVFSTMNLKKTDKALDGADCEGSENNEVPADASCSPNCHNDAVCTDSTIDAEIGQLSVSSELLPCEGAVEPVDSEFEELYGPDKEPLIKKFPDGESRSLHEEGNTEIQSEANGCHNDKKHVLDKAVNTLESRNENVTEKVFVSSITDKSSNISGSKENFQRKEEKSDIPAKQTDSVNHVTRKVEAYIKEHIRPLCKSGVITAEQYRWAVAKTTDKVMKYHCKSKNANFLIKEGEKVKKLAEQYAEAAQQAEQNRKN 1300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi224g00062 1300 MobiDBLite consensus disorder prediction 1192 1216 - -
Sebi224g00062 1300 MobiDBLite consensus disorder prediction 1201 1216 - -
Sebi224g00062 1300 MobiDBLite consensus disorder prediction 461 476 - -
Sebi224g00062 1300 MobiDBLite consensus disorder prediction 777 793 - -
Sebi224g00062 1300 Coils Coil 1277 1300 - -
Sebi224g00062 1300 Coils Coil 556 576 - -
Sebi224g00062 1300 MobiDBLite consensus disorder prediction 931 992 - -
Sebi224g00062 1300 Pfam Zinc finger, C3HC4 type (RING finger) 33 71 IPR018957 GO:0046872
Sebi224g00062 1300 MobiDBLite consensus disorder prediction 931 961 - -
Sebi224g00062 1300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 93 IPR013083 -
Sebi224g00062 1300 MobiDBLite consensus disorder prediction 717 740 - -
Sebi224g00062 1300 MobiDBLite consensus disorder prediction 767 798 - -
Sebi224g00062 1300 MobiDBLite consensus disorder prediction 461 492 - -
Sebi224g00062 1300 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Sebi224g00062 1300 ProSiteProfiles Zinc finger RING-type profile. 33 72 IPR001841 -
Sebi224g00062 1300 PANTHER RING FINGER PROTEIN 41, 151 114 1287 - -
Sebi224g00062 1300 SUPERFAMILY RING/U-box 32 78 - -
Sebi224g00062 1300 SMART ring_2 33 71 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi224g00062 Sebi-Chr224 804261 813987 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi224g00062 33 125 C3H Transcription Factor Family AT3G58030 29.000 8.48e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi224g00062 - - gmx:100808102 1919.44