Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi224g00033 ATGGATAACCAACTCGAAAGTGAAAGTCATGTGCATTACAACCATACTGATCCCTGCAAATACGCAAGATGGACTGCTAGGGAGAGCTTCCAATTTATGTATGCAAGGCCTTGGGAACGAGTCAACGATTTTTATTTGAATGTTGTGAATGGGAACTTGTCTTTGCCACTTCTCTTTGGAGCTGAGACAGTTCTTGATTATAACGATACTGAATTTCAAGCACTTTCGGATAAAACTGAGTTGGAAAGTGTTGCATCTGAAGATCGCTCTGGGAGGTGGGCAAGAAATACCTTCAAAATTGTTCTTTCATATCACGGGAGTTCTTTTGATGGGTGGCAAAAACAGCCAGGATTGAAGACTGTCCAAAGGCAAGTTGCTCTTCTTACAACTTCTGTCTTCATAGTAGAAGGGTCACTTGGTAAATTTGTTGATGAAAAGAAAGCTCAACTGCTCAAGGACAAAGGTTTGCCTATTGAAGGTTGTGCCGTTGTTGCTGGTCGTACAGACAAAGGAGTCACAGGCCTTCAACAATGTAGGCAAGGTAAACCAGCTTTTGCAAAAATTAGAAGGGAAATTGCTGTCCTACAAGATGTTGCTCGTGATACAAAAGCCTCAAGAAATGAATGGTTCGAGTGCTTGTGGCAACGTCAATTTAGAGAAGCTGCTGCAGGTGCTGAAGATGATGCCTTGATAAAGCTCATGGATGCCACGTGTAGGCGTGCCACTGCTCCTCCAGCACCCCCTGATGGCCTATGTCTAGTTGATGTAGGAGTCAGCAGAAGCCTAAAAAGTAGGCATGCAAAAGGTGATCATAACAATTGGCGTGGGGTTCTCTGCAATCAAGGAAAAGTATGGGGCTTGAAGCTTGAGAATATGGGGCTCAAAGGGTTCATTGATGTGGACTCCCTCAAGGAATTACCATATCTTAGAACCATAAGTTTCATGAATAATGATTTGGAAGGTAATGAAGACTTATGTGGAGACCCGTTGGTTTCATGCCATTCCAAGAAGCCCTCAATTGTTAGTATCATTGTGGTTGCGGTCGTTGTTGGTTTGGCAGTGATTGTGATTGCAGCTGTAATAATCATCATCCTTCATCGAAGAAAACAAGGAGCATCAAGTTCAGTGGAAGATCCACCTAGCCTCACCAAAGGACGTGTGAGGGAATCAGGTGATGAAAGCCACAGGTCTTCAAGATCAATGAGCTCCAACCACAGCAGAAGAGGAGACCACATGAAGTTATCTTTCATCAGGGATGACAGGGAGAGGTTTGATTTGCAAGAGTTGCTGAGAGCCTCAGCTGAGATTTTGGGCAGTGGCTGTTTCAGTTCTTCTTACAAGGCTTCTTTGATGAATGGCCCAACAATAGTCGTGAAGAGGTTCAAGCAAATGAACAATGTAGGGAAGGAAGAGTTTCAAGAGCACATGAGAAGGATAGGAAGGTTGAGTAGTCCTAATCTGCTTCCTCTTGTGGCTTATTATTATAGAAAGGAGGAAAAGCTCTTGGTTACCGACTATGTTCAGAATGGCAGCCTTGCTGTTCGCCTTCATGGACACCAAGCTCTAGGGGAACCAAGCCTTGATTGGCCAATCCGGTTGAAGATTGTGAAAGGCATAGCAAAAGGTCTTGAATATCTATACAAGGATATGCCAAGCCTAATTGCACCACATGGAAATCTAAAGTCCTCTAATGTTCTTCTGACTCAATCTTTTGAGCCCCTCCTCACTGACTATGGATTAGTCCCTGTGACCAACCAGGACATGGCACAGGACATCATGGTGATCTACAAGTCACCTGAATATTTGCAGCATGGAAGAATAACAAAGAAGAGTGATGTGTGGTGTCTTGGAACACTAATTCTGGAGATTCTAACGGGCAAGTTCCCTGCTACCTTTATGCAACAGGGTAAAGGAAGTGAGGTAAGTTTGTCAAATTGGGTCCATTCAATTGTCCCAGAAGAATGGACTAGTGCTGTGTTTGATAAAGATATGGGGGCAACCAAGAACAGTGAGGGAGAGATAGTGAAGCTTTTGAAGATTGCCTTGAGTTGTTGTGAAGGTGATGTGGAGAAGAGATCTGATTTGAAAGAAGTAGTAGAGAAAATCCAAGAGGTTAAAGAGAGGGATAATGATGAGGAATTTTATACTTCTTATGCTAGTGAAGCAGACATGAAGCCTTAA 2181 0.4328 MDNQLESESHVHYNHTDPCKYARWTARESFQFMYARPWERVNDFYLNVVNGNLSLPLLFGAETVLDYNDTEFQALSDKTELESVASEDRSGRWARNTFKIVLSYHGSSFDGWQKQPGLKTVQRQVALLTTSVFIVEGSLGKFVDEKKAQLLKDKGLPIEGCAVVAGRTDKGVTGLQQCRQGKPAFAKIRREIAVLQDVARDTKASRNEWFECLWQRQFREAAAGAEDDALIKLMDATCRRATAPPAPPDGLCLVDVGVSRSLKSRHAKGDHNNWRGVLCNQGKVWGLKLENMGLKGFIDVDSLKELPYLRTISFMNNDLEGNEDLCGDPLVSCHSKKPSIVSIIVVAVVVGLAVIVIAAVIIIILHRRKQGASSSVEDPPSLTKGRVRESGDESHRSSRSMSSNHSRRGDHMKLSFIRDDRERFDLQELLRASAEILGSGCFSSSYKASLMNGPTIVVKRFKQMNNVGKEEFQEHMRRIGRLSSPNLLPLVAYYYRKEEKLLVTDYVQNGSLAVRLHGHQALGEPSLDWPIRLKIVKGIAKGLEYLYKDMPSLIAPHGNLKSSNVLLTQSFEPLLTDYGLVPVTNQDMAQDIMVIYKSPEYLQHGRITKKSDVWCLGTLILEILTGKFPATFMQQGKGSEVSLSNWVHSIVPEEWTSAVFDKDMGATKNSEGEIVKLLKIALSCCEGDVEKRSDLKEVVEKIQEVKERDNDEEFYTSYASEADMKP 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi224g00033 726 Coils Coil 692 712 - -
Sebi224g00033 726 Gene3D Phosphorylase Kinase; domain 1 396 506 - -
Sebi224g00033 726 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 261 322 IPR046959 -
Sebi224g00033 726 SUPERFAMILY Pseudouridine synthase 97 178 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Sebi224g00033 726 MobiDBLite consensus disorder prediction 382 412 - -
Sebi224g00033 726 FunFam pollen receptor-like kinase 1 399 506 - -
Sebi224g00033 726 FunFam Pollen receptor-like kinase 1 507 716 - -
Sebi224g00033 726 ProSiteProfiles Protein kinase domain profile. 431 715 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi224g00033 726 MobiDBLite consensus disorder prediction 373 412 - -
Sebi224g00033 726 SUPERFAMILY Protein kinase-like (PK-like) 435 706 IPR011009 -
Sebi224g00033 726 Gene3D Transferase(Phosphotransferase) domain 1 507 718 - -
Sebi224g00033 726 Gene3D Ribonuclease Inhibitor 256 329 IPR032675 -
Sebi224g00033 726 Pfam Protein tyrosine and serine/threonine kinase 435 702 IPR001245 GO:0004672|GO:0006468
Sebi224g00033 726 Gene3D - 87 204 IPR020094 GO:0003723|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi224g00033 Sebi-Chr224 381851 391036 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi224g00033 319 723 Receptor kinase-like Gene Family AT5G35390 54.630 3.17e-151 453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sebi224g00033 PK_Tyr_Ser-Thr 1.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi224g00033 - - gmx:100804368 632.484