Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi224g00029 ATGTTTGATCGCCATAATACTGCATTATTCTCTGCATATGCAGATGAGAAGCATAAAACACTGAGCGTTATGGAAGGCTATTACAGAACACGGAGAGAAAACGGAGTGACTGTGCCATCGTGTTCTTCTTCGCGTGAGGAATTCCACTCTCGCGGTGGAAAAGGACTACTGGGAAAGGCTAATGCTCCTTCATCTTCGAGATACGATATGACTGTAATCGGGAATGTTAAGAAGAAGCAAAAACGTAAATGTCTACAAGAGTTGTTTACAGAAGACTTCATTGTTAGCAATGTGTTACGGAAGGATGGCCCTCCACTTGGCCGGGAATTTGATTCTCTTCCTTATGGACCCAAAAATCACACTTCTGCTTGTCAAGAGGACCAAGGACCCACCAGAAGGAGGAAGGTCCTCTTTCCTCAGGTTTCTACGAGTGCAATTCATAGTCGCCCTGATTGTAATATGAAAGCACCTGTGAAGAAACATGGTATTGGCAAAGGTCTGATGACAGTTTGGAGGGCAACTAATCCTGATGCTGGAGACCTTCCAATTGGTTTTGGTTTTGCTGACCAAGAAGTTCATCAAATCTCTAATTCTATAGCACAGAAACCAGTCCATGAGAACAACAGGTCACGGAAGTCAGTAACCTTGAATGGGGAGTCGAACCAATACGTGACTCAGGAGCAGTCACCAAAGGAAAAATGTGATCTTGCTTTAGATGGCGCAATACCAGAGGAGGGAGTTGATCGAATTTCAATGTTAATTGATGATGAAGAGCTAGAGTTGAGAGAGTTACAAGAAGGAACCAATGTGCTTGTATGTTCAGATCATCTTGTTGCCAGTGGAATGCTTGGCTGCTCACTTTGTAAAGATGTACTAGTTAAGTTCCCCCCAGAAACTGTCAAGATGAGAAAACCTATACGTTTGCAACCTTGGGACTCCTGTCCAGAACTTGTGAAGAAATTATTTAAGGTTTTCCATTTCATTTATACATATGCTATAGTTGTTGATATATGTCCCTTCACTCTTGATGAGTTTGTTCAGGCATTTCATGACAAGGACTCAATGTTACTCGGAAAGATTCATGTGGCCCTTCTCACACTTCTTCTATCTGACATCGAAGTTGAGCTTACTAATGGATTCTCACCTCATTTAAATAAGTCATGCAACTTTCTGGCCTTGCTTCACTCGGTTGAAAGTCGAGAATATTCCCTTGACTTCTGGAGAAGATCTCTAAATCCTCTTACATGGATTGAAATACTTCGTCAAGTGCTGGTTGCTTCTGGATTTGGTTCAAAACAAAGTGCCTTGCGAAGAGAGGCCCTTAGCAAGGAATTAAATCTTCTTGTCAACTATGGCTTATGCCCTGGCACCTTGAAGGGTGAGTTGTTTAAAATCTTGTCAGAGCGAGGAAACAATGGATGCAAAGTATCTGACCTGGCAAAATCAATGCAGATTGCTGAATTAAACCTGGTCAGTACAACAGAGGAACTGGAGTCTTTAATATGTTCCACACTTTCAAGTGATATTACTTTATTTGAAAAGATTTCATCATCTGCATATCGATTGCGAATGAGCACTGTTATGAAGGACAATGATGAATTTCAGTCAGATATGGAGGATTATGGAAGTGTCGATGATGAACTTAACGACACTGATACGTGTAGCAGTGGTGATGATTTTGAAAGTGATTCAATAAACACCAATATAAGAAAATTGAAGCGTGCAAACAGTCGGAAAATTAAAAATAATATCCTGAAAGTATACACTGAAATAGATGAGAGTCATCCAGGAGAAGTGTGGTTGTTAGGACTGATGGAAAGTGAATATTCAGATTTGAACATTGAGGAAAAATTGAATGCATTGGTGGCTCTAACTGATCTTGTTTCATCTGGATCCAGCATCAGGATGAAGGATCGAATAAAAGTTACAGCTGATTGCAATTCTAGCATCCAATTACGTGGTTCTGGAGCAAAAATAAAGAGGTCAGCAGTAAAGAAGGCTGGACCATTTTGGAACCAGGTTGGGCTAATGCAATGTGTTACAGAAGTGGACTTGAGTTCTCATTCCTGTCCAGTAGATTCTGCGTCATTAATCTCAAAATTCCATAGTCAGGCATCCTTTGACAAAGCAAAAGGATCAACTGATTCACACCCCATTCAATCAGTGTATTTGGGATCTGATCGTCGGTACAATAGATACTGGTTATTCTTGGGCCCTTGTAATGCAGATGATCCTGGCCACAGGAGGGTTTACTTTGAATCTTCTGAAGATAGTCACTGGGAGGTGATTGATACTGAAGAGGCATTGTGTGCCTTGTTGTCAGTTCTTGATGATAGAGGGAAACGGGAAGCTCTTCTTATTGAATCTCTGGAGAGGCGACAGACATCTCTATGCAGATCTATGTCCAGGATTAAGGTTAACAGTACTGGAATGGGGTGTATGTCACATTCTGATCAATCTGAGCTGGATTCTCCCATATCTGATGTAGACAACCTGAACTTGACTGAGACTGATAAAGACTCTTTGCAGTCATCTGGGGCTGTGGTAATTGAAGCTGGAAAGAAAGCAGAGGAACAAATACAAAAGTGGATCCGTGTTCAAGAATATGATTCTTGGATTTGGAATTCCTTTTATTTAGATCTCAATGTTGTAAAATATGGTAGAAGGTCTTATCTTGACTCTCTAGCCAGATGTAAGAGTTGTCATGATCTATACTGGAGAGATGAGAGACACTGTAAAATTTGCCATATGACATTTGAGCTTGATTTTGATCTAGAAGAAAGATATGCAATCCACATAGCCACATGCAGGGAGAAAGAAGACAGCAACACATTTCCAAATCATAAAGTCTTAGCATCACAGATTCAATCACTGAAAGCTGCAATTTATGCTATTGAGTCTGTTATGCCTGAAGATGCCCTAGTCGGTGCTTGGAGGAAGTCTGCTCATAAACTATGGGTCAAGCGGCTCAGACGCACCTCAACTTTAGTGGAACTTTTGCAGGTTCTTGCTGATTTTGTTGGTGCCATCAATGAGGACTGGTTATTCCAATGCAAATTTCCAGATGGTGTGGTTGAAGAAATCATTGCATCTTTTGCATCTATGCCCCATACATCATCTGCCCTTGCTCTGTGGTTGGTGAAGTTAGATGCCATAATTGCTCCCTACCTGGACAGAGTCCATCCTCAGAAAAAGCAGGGAATCGTTTTCACTTATTTTAGATTTTTGGTTATCTGCTTGAAAATGAAGGATTAA 3255 0.4089 MFDRHNTALFSAYADEKHKTLSVMEGYYRTRRENGVTVPSCSSSREEFHSRGGKGLLGKANAPSSSRYDMTVIGNVKKKQKRKCLQELFTEDFIVSNVLRKDGPPLGREFDSLPYGPKNHTSACQEDQGPTRRRKVLFPQVSTSAIHSRPDCNMKAPVKKHGIGKGLMTVWRATNPDAGDLPIGFGFADQEVHQISNSIAQKPVHENNRSRKSVTLNGESNQYVTQEQSPKEKCDLALDGAIPEEGVDRISMLIDDEELELRELQEGTNVLVCSDHLVASGMLGCSLCKDVLVKFPPETVKMRKPIRLQPWDSCPELVKKLFKVFHFIYTYAIVVDICPFTLDEFVQAFHDKDSMLLGKIHVALLTLLLSDIEVELTNGFSPHLNKSCNFLALLHSVESREYSLDFWRRSLNPLTWIEILRQVLVASGFGSKQSALRREALSKELNLLVNYGLCPGTLKGELFKILSERGNNGCKVSDLAKSMQIAELNLVSTTEELESLICSTLSSDITLFEKISSSAYRLRMSTVMKDNDEFQSDMEDYGSVDDELNDTDTCSSGDDFESDSINTNIRKLKRANSRKIKNNILKVYTEIDESHPGEVWLLGLMESEYSDLNIEEKLNALVALTDLVSSGSSIRMKDRIKVTADCNSSIQLRGSGAKIKRSAVKKAGPFWNQVGLMQCVTEVDLSSHSCPVDSASLISKFHSQASFDKAKGSTDSHPIQSVYLGSDRRYNRYWLFLGPCNADDPGHRRVYFESSEDSHWEVIDTEEALCALLSVLDDRGKREALLIESLERRQTSLCRSMSRIKVNSTGMGCMSHSDQSELDSPISDVDNLNLTETDKDSLQSSGAVVIEAGKKAEEQIQKWIRVQEYDSWIWNSFYLDLNVVKYGRRSYLDSLARCKSCHDLYWRDERHCKICHMTFELDFDLEERYAIHIATCREKEDSNTFPNHKVLASQIQSLKAAIYAIESVMPEDALVGAWRKSAHKLWVKRLRRTSTLVELLQVLADFVGAINEDWLFQCKFPDGVVEEIIASFASMPHTSSALALWLVKLDAIIAPYLDRVHPQKKQGIVFTYFRFLVICLKMKD 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi224g00029 1084 ProSiteProfiles DDT domain profile. 315 374 IPR018501 -
Sebi224g00029 1084 MobiDBLite consensus disorder prediction 38 62 - -
Sebi224g00029 1084 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 596 635 IPR028942 -
Sebi224g00029 1084 PANTHER HOMEOBOX PROTEIN SIX 217 1061 - -
Sebi224g00029 1084 Pfam DDT domain 316 371 IPR018501 -
Sebi224g00029 1084 MobiDBLite consensus disorder prediction 110 131 - -
Sebi224g00029 1084 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 720 793 IPR028941 -
Sebi224g00029 1084 SMART testlast3 315 374 IPR018501 -
Sebi224g00029 1084 Coils Coil 247 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi224g00029 Sebi-Chr224 330861 338383 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi224g00029 253 1068 Homeobox Transcription Factor Family AT1G28420 27.060 3.36e-73 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR DDT Sebi224g00029 WSD 5.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi224g00029 - - gmx:100792062 1677.14