Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi223g00088 ATGGGGAAGAAAGGAAGTAGCTCATGGTTAACTGCTGTCAAAAGGGCATTCAGATCTCCCACCAAAGACACTGACAAAAGGAGTGGTAGAAGAAGAGAGGACTATGATGAAGAGAAGAAGAGAGAAAAACGAAGGTGGATTTTCAGGAAAGCTGTGAATCATGAAACGGTGAACACTCAACAAACTCCAACAAAGTTGAAGCATGATGTGGCTTCAAGGAAAGACCAAGATCAAAAGCATGCTCTTGCTGTGGCAGTGGCCACCGCAGAGGCAGCCATGGCCACCGCTCAAGCTGCTGTGGAGGTGGCAAGGTTGACCAAGCCTTCTTCTTCTAATCATGTTTCTGCAAAGGAGCATTATGCTGCTGTTGTGATTCAAACTGCTTTCAGAGGATATCTGGCAAGAAGAGCACTTCGTGCGCTAAAGGGGCTGGTGAAGTTGCAAGCTTTAGTGAGGGGTCACAATGTTAGGAAGCAAGCAAAGATGACCCTTCGGTGCATGCAAGCTCTGGTTAGAGTACAAGCAAGGGTCCTTGACCAGCGCATAAGGTCTTCCCTTGATGGAAGTAGAAAATCCACCTTCAGTGACACTGCCAGCGTTTGGGAATCACGGTATCTTCAGGACATTTCAGATAGAAAATCAATATCAAGAGAAGGAAGCAGCATTGCAGATGACTGGGATGAACGTCCACACACAGTTGAAGAAGTGAAGGCCATGTTGCAACAGAGGAAGGAAGCAGCTATGAAGAGGGACAAGTCCTTATCCCAAGCTTTTTCACAACAGATTTGGAGGAATGGTAGGACATCATCAATTGGGACAGAAGATGAGCTTGAAGAGAGACCAAAATGGTTGGACAGGTGGATGGCTGCAAAGCCATGGGAAAGCAGGGGAAGAGCTTCAACAGATCAAAGAGACCCCATTAAGACTGTAGAAATTGACACATCTCAACCTTATTCATATCTAGGAACCAATTACAGAAGATCACATCCAAATTATCAGTATAACCCACACCACCACCAACCACAAAGACATTCAATTGCTTCCCCACTCCACAGAACCCATCAAAATAGTGGATCCCTTCACCAAACACTCACAACCCCTTCTCCAGCAAAATCAAGACCCATCCAAGTCCGTTCTGCAAGCCCTCGTTGTGTTAGAGAAGATAGAAGCTACCACAGTTCACAATCTCAAACACCAAGCTTGAGGTCTAATTACCATTGCACAGGGAACTTGTACCAAAATGGTAGTAGCAGGGTAGTAGGAACAAGTAATAGTGGTGGTGCTAACTTGCCTAATTACATGGCAGCAACTGAGTCTGCAAAGGCTAGAATTAGATCACAGAGTGCACCAAGGCAGAGGCCATCCACACCAGAAAGGGATAGAGTTGGATCAGCAAAGAAAAGGCTTTCTTTTCCTGCTCCAGATCCATATAATGTAGGAGTGGGTTATGGAAATTATGGGCATAATTTAAGGAGTCCAAGCTTCAAGAGTGTGAGTGCATCACATTTTGGGTTGGAGCAACAATCCAACTACTCTTCTTGCTACACAGAGAGTCTTGGTGGTGGTGAGGTTTCTCCTTCTTCCACTGGTGACCTTAGAAGGTGGTTGAGATGA 1614 0.4554 MGKKGSSSWLTAVKRAFRSPTKDTDKRSGRRREDYDEEKKREKRRWIFRKAVNHETVNTQQTPTKLKHDVASRKDQDQKHALAVAVATAEAAMATAQAAVEVARLTKPSSSNHVSAKEHYAAVVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKMTLRCMQALVRVQARVLDQRIRSSLDGSRKSTFSDTASVWESRYLQDISDRKSISREGSSIADDWDERPHTVEEVKAMLQQRKEAAMKRDKSLSQAFSQQIWRNGRTSSIGTEDELEERPKWLDRWMAAKPWESRGRASTDQRDPIKTVEIDTSQPYSYLGTNYRRSHPNYQYNPHHHQPQRHSIASPLHRTHQNSGSLHQTLTTPSPAKSRPIQVRSASPRCVREDRSYHSSQSQTPSLRSNYHCTGNLYQNGSSRVVGTSNSGGANLPNYMAATESAKARIRSQSAPRQRPSTPERDRVGSAKKRLSFPAPDPYNVGVGYGNYGHNLRSPSFKSVSASHFGLEQQSNYSSCYTESLGGGEVSPSSTGDLRRWLR 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi223g00088 537 MobiDBLite consensus disorder prediction 310 375 - -
Sebi223g00088 537 ProSiteProfiles IQ motif profile. 142 169 IPR000048 GO:0005515
Sebi223g00088 537 MobiDBLite consensus disorder prediction 391 405 - -
Sebi223g00088 537 FunFam IQ-domain 11 117 168 - -
Sebi223g00088 537 MobiDBLite consensus disorder prediction 1 41 - -
Sebi223g00088 537 MobiDBLite consensus disorder prediction 514 537 - -
Sebi223g00088 537 ProSiteProfiles IQ motif profile. 118 146 IPR000048 GO:0005515
Sebi223g00088 537 MobiDBLite consensus disorder prediction 438 473 - -
Sebi223g00088 537 MobiDBLite consensus disorder prediction 294 405 - -
Sebi223g00088 537 MobiDBLite consensus disorder prediction 294 309 - -
Sebi223g00088 537 SMART iq_5 140 161 IPR000048 GO:0005515
Sebi223g00088 537 SMART iq_5 117 139 IPR000048 GO:0005515
Sebi223g00088 537 Gene3D - 115 170 - -
Sebi223g00088 537 Pfam Protein of unknown function (DUF4005) 381 486 IPR025064 -
Sebi223g00088 537 MobiDBLite consensus disorder prediction 18 41 - -
Sebi223g00088 537 PANTHER IQ-DOMAIN 5-RELATED 1 473 - -
Sebi223g00088 537 Pfam IQ calmodulin-binding motif 145 161 IPR000048 GO:0005515
Sebi223g00088 537 Pfam IQ calmodulin-binding motif 121 139 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi223g00088 Sebi-Chr223 1211480 1213663 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi223g00088 9 537 IQD Protein Family AT4G00820 58.528 0.0 521
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi223g00088 - - gmx:100786729 849.736