Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi223g00087 ATGTCTCAACAAAGGCAACCTCAGATGGTGGGTGGTGACAATTTGGCCCAATATAATGACACAACATTTACCAAAATCTTTGTTGGAGGGTTAGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAATTTGGAGAGATCTTAGAGGCTGTTGTTATCACAGATAAGAACACAGGGAGATCCAAAGGTTATGGCTTTGTCACATTTAAGGATCCAGAGGCAGCCATGAGAGCATGTCACAACCCATCTCCAGTTATTGATGGGAGGAGGGCAAACTGCAATCTTGCTTCTCTTGGTGCAAACAAGAATAGACAACTACCTCTTCAGCATGGTGCAGGAAGGTTCAGGCCTCCACCTGGACTGGTGGCATCACCTCCTTATCATGGTTCTTCATCTTCATTTTTCCATCAACCCACTAGGCAATACACATTTCCTTATTCAGCTTACGGATATTCTGGATATTCACAAGACACATTGTATCCTACGAACTATTATAATGTCTATGGAGTTCAACAATTTTCACCTTACTACCCATCCACGGGAGCTTCTGGGGCAGTGGGGTTGATCCCTAATATCTACCCTTTCTATGGTCAATATGCACAGAACATCCAGACTCATGGTTTTGGAGTTCAGTACCCCCAAGTGGCACAGTTTCCATTTTTGCCTCAGCAATATGGCTCCACAGGGATATTGTCATTTCCTTCTTCAGTGGCAGTGCCAACTACAAGTGCAGTAACAAGTGTTGGTAGCTCACAAGCCTCTGAACAAAATTCTACATCTTGA 792 0.4407 MSQQRQPQMVGGDNLAQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACHNPSPVIDGRRANCNLASLGANKNRQLPLQHGAGRFRPPPGLVASPPYHGSSSSFFHQPTRQYTFPYSAYGYSGYSQDTLYPTNYYNVYGVQQFSPYYPSTGASGAVGLIPNIYPFYGQYAQNIQTHGFGVQYPQVAQFPFLPQQYGSTGILSFPSSVAVPTTSAVTSVGSSQASEQNSTS 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi223g00087 263 SMART rrm1_1 25 97 IPR000504 GO:0003723
Sebi223g00087 263 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 18 105 - -
Sebi223g00087 263 Gene3D - 1 116 IPR012677 -
Sebi223g00087 263 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 26 81 IPR000504 GO:0003723
Sebi223g00087 263 CDD RRM_RBM24_RBM38_like 24 99 - -
Sebi223g00087 263 PANTHER BOULE-RELATED 12 243 - -
Sebi223g00087 263 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 24 116 IPR000504 GO:0003723
Sebi223g00087 263 SUPERFAMILY RNA-binding domain, RBD 10 122 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi223g00087 Sebi-Chr223 1193368 1194968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi223g00087 20 100 C2H2 Transcription Factor Family AT2G19380 44.444 5.05e-16 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi223g00087 - - pvu:PHAVU_010G118600g 445.662