Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sebi223g00087 | ATGTCTCAACAAAGGCAACCTCAGATGGTGGGTGGTGACAATTTGGCCCAATATAATGACACAACATTTACCAAAATCTTTGTTGGAGGGTTAGCTTGGGAGACTCAGAGGGACACAATGAGGAGGTATTTTGAGCAATTTGGAGAGATCTTAGAGGCTGTTGTTATCACAGATAAGAACACAGGGAGATCCAAAGGTTATGGCTTTGTCACATTTAAGGATCCAGAGGCAGCCATGAGAGCATGTCACAACCCATCTCCAGTTATTGATGGGAGGAGGGCAAACTGCAATCTTGCTTCTCTTGGTGCAAACAAGAATAGACAACTACCTCTTCAGCATGGTGCAGGAAGGTTCAGGCCTCCACCTGGACTGGTGGCATCACCTCCTTATCATGGTTCTTCATCTTCATTTTTCCATCAACCCACTAGGCAATACACATTTCCTTATTCAGCTTACGGATATTCTGGATATTCACAAGACACATTGTATCCTACGAACTATTATAATGTCTATGGAGTTCAACAATTTTCACCTTACTACCCATCCACGGGAGCTTCTGGGGCAGTGGGGTTGATCCCTAATATCTACCCTTTCTATGGTCAATATGCACAGAACATCCAGACTCATGGTTTTGGAGTTCAGTACCCCCAAGTGGCACAGTTTCCATTTTTGCCTCAGCAATATGGCTCCACAGGGATATTGTCATTTCCTTCTTCAGTGGCAGTGCCAACTACAAGTGCAGTAACAAGTGTTGGTAGCTCACAAGCCTCTGAACAAAATTCTACATCTTGA | 792 | 0.4407 | MSQQRQPQMVGGDNLAQYNDTTFTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKDPEAAMRACHNPSPVIDGRRANCNLASLGANKNRQLPLQHGAGRFRPPPGLVASPPYHGSSSSFFHQPTRQYTFPYSAYGYSGYSQDTLYPTNYYNVYGVQQFSPYYPSTGASGAVGLIPNIYPFYGQYAQNIQTHGFGVQYPQVAQFPFLPQQYGSTGILSFPSSVAVPTTSAVTSVGSSQASEQNSTS | 263 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sebi223g00087 | 263 | SMART | rrm1_1 | 25 | 97 | IPR000504 | GO:0003723 | |
Sebi223g00087 | 263 | FunFam | RNA-binding (RRM/RBD/RNP motifs) family protein | 18 | 105 | - | - | |
Sebi223g00087 | 263 | Gene3D | - | 1 | 116 | IPR012677 | - | |
Sebi223g00087 | 263 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 26 | 81 | IPR000504 | GO:0003723 | |
Sebi223g00087 | 263 | CDD | RRM_RBM24_RBM38_like | 24 | 99 | - | - | |
Sebi223g00087 | 263 | PANTHER | BOULE-RELATED | 12 | 243 | - | - | |
Sebi223g00087 | 263 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 24 | 116 | IPR000504 | GO:0003723 | |
Sebi223g00087 | 263 | SUPERFAMILY | RNA-binding domain, RBD | 10 | 122 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sebi223g00087 | Sebi-Chr223 | 1193368 | 1194968 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sebi223g00087 | 20 | 100 | C2H2 Transcription Factor Family | AT2G19380 | 44.444 | 5.05e-16 | 75.5 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sebi223g00087 | - | - | pvu:PHAVU_010G118600g | 445.662 |