Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi223g00071 ATGGATTTAGGAGGCCCCACTATGACCCGGTTGGTTGGGGATTACATACTCGGTCCTCGAATCGGGTCGGGTTCATTCGCGGTGGTGTGGCGTTCGCGGCATCGACACTCAGGTTTGGAATTCGCGGTGAAAGAGATTGACAAGACGCAGTTGAGTCCCAAAGTGAGAGAGAATCTGATCAAAGAGATTTCTATCCTTAGCACCATCGATCACCCTAACATCGTTCGTCTCTTCGAAGCAATTCAGACCAATGACAGGATTTACCTTGTTTTGGAGTATTGTGGTGGTGGGGACCTCGCTGGTTACATCAATCGCCATGGCAGAGTTTCAGAACCCATTGCTCGCCATTTCATGAGGCAATTGGCTGCTGGGTTGCAGGTGCTTCAAGAAAAGAACCTCATACATAGAGATTTAAAACCACAGAACTTACTGTTGGCAACTACTGCAGCTATGCCAATTATGAAAATAGGGGATTTTGGTTTTGCAAGGTCTCTTACACCCCAGCAGTTGGCAGATACACTATGTGGTTCACCTTATTACATGGCTCCAGAGATAATTGAAAGTCAAAAGTATGATGCTAAGGCTGATTTATGGAGTGTTGGGGCAATATTGTATCAGTTAGTAATTGGGAGGCCACCATTTGATGGAAATAGTCAATTGCAGCTTTTTCAAAATATTTTGGCATCTACTGAACTGCACTTTCCACCAGAGGCTTTAAAAGAGCTACATTCTGATTGCTTGGATCTTTGCAGAAGCCTATTACGTCGAAACCCAGATGAGAGATTAACATTCAAGGCATTCTTCAATCACAATTTCCTACAAGAACCCAGGTCCATCATGAATATTGAGCAGTTTCAGTTACATCAATCAGAAACATCAACGGTTCATCAATTAGTTGGCTCTGCCTCTGAGAAGATGTCTCAATCACATTCTGAGTATCATGTTGAGTCATTTGTTGATGATCCAGTGGTAGTCAGTTCAGCTGTCAATGAGACCATGCTTTTGCAAAGAAAGGATGGCAAGATTACAGCTGGCACTAAGAGTGTTAGAGGGTCAACTCCAACTATTGCAAGTGATAAGCTGGGGAAGTCTGTTGATGCTGGTACTCATTTGCCAAACCAACCTCAAGTATCCCATTTAATGGAGTCCATTGAGAAAGATTATGTCCTCATCAATTCTCATTTTGCATCACTGGAAGCTTTCTCTGACTACTTTGATGCATCTGTGCAAGATAAATGTTCAAGCAGGGTTTCTATCTGTCCTTCAAAGAGGACTAACCTGGAGACTGGAGTTGCAAAGCAAACAAAGGATCTGTCCTCTTCCTCCACTGATGGGTTAGAAGGTTTTAAAAGAAATGAACTTGAGGCATCAGTGGGATTCTGTGAGTTTGCTGCCTCAAGGAAAGAGCAGGGAATTTCGTCTCAGCACCCTTCAAACAGGTTAGGGTTGTTGCATCAGTATGTGCAGATCCTTGGAGAAATTTCGCAAGAAAAGTATAATACAGGACTGTATCTAGAGTCGCTTGCAGTTGAGTTGGTGATTTTAGCTATATGGAAGAAAGCTCTAGAAATTTGTAGCTCTTGCATAGCCTCCATGGCTGAGGGTGAGCTGCCTGGAAGCAGTTCAGCTAATAAATTCATATTTTCCTGTGGAGATGGGAGCATATCACAGACTATGGAACAGAAAATAAATTTTACTGATCCTTCATCTGTCTCCTTGTGGGCCAAACATGGGTTTATTGTTGCAGTTGATCGTGCTGAGAAATTAACACGTCATATTCAAAACATGGATGGGGCAGCTGAGATGCCAGATGCAATGGAGATTATATTCCGACAAGCACTCTTAATCGGGACAAGTGGTGCTGTAGATGAGTATATGAAGAACGGAAATAGAGCTGCTGCATCCTACTCAAAAGCAATGCTTCTACTTTCATTTATTGTGGAAGAAGCAGAGAACCTTCCACTGAACCCACCATTTTCACTTCATGATGCTAATAAGAAGAGAATCTTACAATACATTCGCAACTTGCAGTTTCGGAAAACATCATCATCAGAGTCCTCTACAAAGGAAGCCCATGCTCTTACGACAAAGTAA 2094 0.4269 MDLGGPTMTRLVGDYILGPRIGSGSFAVVWRSRHRHSGLEFAVKEIDKTQLSPKVRENLIKEISILSTIDHPNIVRLFEAIQTNDRIYLVLEYCGGGDLAGYINRHGRVSEPIARHFMRQLAAGLQVLQEKNLIHRDLKPQNLLLATTAAMPIMKIGDFGFARSLTPQQLADTLCGSPYYMAPEIIESQKYDAKADLWSVGAILYQLVIGRPPFDGNSQLQLFQNILASTELHFPPEALKELHSDCLDLCRSLLRRNPDERLTFKAFFNHNFLQEPRSIMNIEQFQLHQSETSTVHQLVGSASEKMSQSHSEYHVESFVDDPVVVSSAVNETMLLQRKDGKITAGTKSVRGSTPTIASDKLGKSVDAGTHLPNQPQVSHLMESIEKDYVLINSHFASLEAFSDYFDASVQDKCSSRVSICPSKRTNLETGVAKQTKDLSSSSTDGLEGFKRNELEASVGFCEFAASRKEQGISSQHPSNRLGLLHQYVQILGEISQEKYNTGLYLESLAVELVILAIWKKALEICSSCIASMAEGELPGSSSANKFIFSCGDGSISQTMEQKINFTDPSSVSLWAKHGFIVAVDRAEKLTRHIQNMDGAAEMPDAMEIIFRQALLIGTSGAVDEYMKNGNRAAASYSKAMLLLSFIVEEAENLPLNPPFSLHDANKKRILQYIRNLQFRKTSSSESSTKEAHALTTK 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi223g00071 697 CDD STKc_ATG1_ULK_like 21 272 - -
Sebi223g00071 697 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Sebi223g00071 697 Gene3D Transferase(Phosphotransferase) domain 1 7 347 - -
Sebi223g00071 697 Pfam Protein kinase domain 19 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi223g00071 697 MobiDBLite consensus disorder prediction 345 374 - -
Sebi223g00071 697 ProSiteProfiles Protein kinase domain profile. 15 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi223g00071 697 FunFam Serine/threonine-protein kinase ATG1 7 316 - -
Sebi223g00071 697 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 10 556 IPR045269 GO:0004674|GO:0006914
Sebi223g00071 697 ProSitePatterns Serine/Threonine protein kinases active-site signature. 133 145 IPR008271 GO:0004672|GO:0006468
Sebi223g00071 697 SMART serkin_6 15 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi223g00071 697 FunFam Non-specific serine/threonine protein kinase 5 95 - -
Sebi223g00071 697 SUPERFAMILY Protein kinase-like (PK-like) 11 316 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi223g00071 Sebi-Chr223 891969 897504 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi223g00071 5 291 CBL-interacting serine-threonine protein kinases AT2G30360 34.354 2.65e-50 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Sebi223g00071 Pkinase 1.7e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi223g00071 - K08269 gmx:100779262 1051.58