Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi223g00068 ATGGGGAACCCAACATCAATGGTGGAAACGGTGCCTGTAGGTTATAGATTCCATCCAACTGATGAAGAGCTTGTGGGTCATTACTTGAAACACAGGTTGCTTGGTGATGATTCCGGGGTGCACAATATCATAGCTGAGGTTGATGTTTGCAATCCTCTTGATTTGAAGTGCACAAAAAGCATGAGATGTAACAGGAAAACCAAGACTGGGTACTGGAAGATCACTGGTAAAGACCGTAACATCAAGACCAGAGCTACCAATAAGGTTATTGGCACAAAAAAGACCCTGGTTTTCTACAAGGGTTGTGGTCGTCGCCGTGACAAGACCAATTGGGTCATTCATGAATATCATGCAGTTACCTTTCCTAATGACAAGAGAGGTTTTGTCTTGTGTCGCTTAATTAAGAAACCAGAGAAAACAGGAGAAGGGGGTGCTGATGAATTAATACATGATGAAGGGAAGCCAAGTAGCCATGTTGCTTCTGACTATGAAAACAATGCAACAGCAGATAGGGATCCAGATGTGAGTAGAAGCATCAAGGTGGTATATGCTTCACCAGAAGTGAATTTGGAATCTTTCTTTCCAGCACCACCTGTAGCAGAGGAATATGACTTCCTCTTAGCACAGCAGTCTCCAGTTGTCACTGAAGAGGCGCCAAATTTCCAAGATTTCTCATTTCTGAATTCCTTTTCTGGGGATGAAGATAGCCTTATGGAGTTAACTACTGAGGAGGAGGGCAATATTGATTCATTCCTGAATTCAATTTTAGCTAATAATGATGTTTTTATTGGACAAGAAACAGCACCTGCTTTTTTTGATGATTCCACTGCCTCACAGTCTTTGAGCAAGGTCTATAATGAAAGCAGAGAAACAACAGACACTGAACTACTCTCTGCACTGAGTGTTTGCTCTCCTCCACCTCAGGCTGGCTCTTCTTCACCTCTGGGAACACACATTAGCATTTCAAGCCAAGCAGTTTCCCAACAAGAGGCACTGATGGAAACACACATACTGGAGTCAAATATAGAGCAGGGTACCAGTTCAAGAAATGAATTGGAAACCACAAGCAATGTATCATCTGGTGTCATTTTAAAGGGTTCTATAATCCACTTGGAGGCTCCTTTAGTGCAAAGGTCATGGTTTGTTTATCCCTCAGGTGGAGTTGTGCTTCGTCTTGGCATGGTTTTGAATTTCAGTATTTCACCATGA 1209 0.4251 MGNPTSMVETVPVGYRFHPTDEELVGHYLKHRLLGDDSGVHNIIAEVDVCNPLDLKCTKSMRCNRKTKTGYWKITGKDRNIKTRATNKVIGTKKTLVFYKGCGRRRDKTNWVIHEYHAVTFPNDKRGFVLCRLIKKPEKTGEGGADELIHDEGKPSSHVASDYENNATADRDPDVSRSIKVVYASPEVNLESFFPAPPVAEEYDFLLAQQSPVVTEEAPNFQDFSFLNSFSGDEDSLMELTTEEEGNIDSFLNSILANNDVFIGQETAPAFFDDSTASQSLSKVYNESRETTDTELLSALSVCSPPPQAGSSSPLGTHISISSQAVSQQEALMETHILESNIEQGTSSRNELETTSNVSSGVILKGSIIHLEAPLVQRSWFVYPSGGVVLRLGMVLNFSISP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi223g00068 402 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 273 - -
Sebi223g00068 402 SUPERFAMILY NAC domain 7 136 IPR036093 GO:0003677|GO:0006355
Sebi223g00068 402 MobiDBLite consensus disorder prediction 140 172 - -
Sebi223g00068 402 ProSiteProfiles NAC domain profile. 11 136 IPR003441 GO:0003677|GO:0006355
Sebi223g00068 402 Pfam No apical meristem (NAM) protein 12 51 IPR003441 GO:0003677|GO:0006355
Sebi223g00068 402 Pfam No apical meristem (NAM) protein 56 117 IPR003441 GO:0003677|GO:0006355
Sebi223g00068 402 MobiDBLite consensus disorder prediction 140 158 - -
Sebi223g00068 402 Gene3D NAC domain 20 141 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi223g00068 Sebi-Chr223 813739 816697 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi223g00068 8 137 NAC Transcription Factor Family AT1G33060 42.405 9.61e-32 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi223g00068 NAM 1.8e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi223g00068 - - ccaj:109803958 299.671