Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi223g00066 ATGGATAACACATTTCCCATACTAGATTTCATGCCTGTAGGATTCAGATTTCGTCCAACAGATGAAGAGCTTGTGGAGCACTACCTCAAGCACAAGTTGCAGGGTGATGATTTCCCTGTTCATATCATCCCTGAGCTTGATCTTTGCAAGTATGAGCCTTGGGAAATACCAGCTTTCTCGGTGATAAAGTCCGATGACCCAGAATGGTTTTTCTTCAGTCCTCGTGATTACAAATATGCAAAGAGTAAAAGGTTTAACAGGGCAACTAAGTGTGGCTTCTGGAAAGCCACTGGGAATGACCGTAAAATCAAGACCAGAGGCACCAACAATGTCATTGGGACCAAGAAGACTCTTGTTTTCTATGAAGGCCGTGTTCCTTCTGGTGTCAAAACCAGTTGGGTTATTCATGAGTATCATGCTGTTACCTTTGATGATAGCCAGAGGACCTTTGTTTTATGTCGCTTGATGAAGAAAGCTGAGAAAAAAGCTGAAGGGGGAACTGATGCAATGATATGTAATGAAGGGGAGCCCAGTAGACACATAGCTTCCGACTATGAAAATGAAGCAACAGCAGAAGGAATTCCAGATGTAGGTGGTACTTTGCCAGAAATGAATATGGAATCAATCTTTCAGGAACCGCATCAGGCAGAGAATTACTTCCCCTCAAACCAACAGTCTCCAGTTGGAATTGAGCAGGAAGCATCTTTCCCAAACTCCCCACTTCTCAATGCCTATTTTAGAAATGAAAACAGCAGTATGCAGACTCCATTGGAGACTACAGAAGAGGAAGATGAGTTCGTGAATTCAATTTTAGTTGATGGGAATTTTTTTATCACTGAAGAAAGAAGAAATGCTTTTGTCAATAGTTCCACTCAGTCAGAGTCATTGAGAAGGGTATACTATGAAAGCAGTGACACGGATGCTGAAGTAGCCTCTGCACTGTGTGGCAATATTCTGGATACTTCAACAGTACATAATGGACATTCTAGTTCAGGTGAATATCATGCATCAAAAATGTTTAAATCATCACATGGTGCTGTCCATGGTGGCACATGTCTTCCATTTTCTATTCATGATGCAAGCAAAGAGAAAAGGGAGAGTACCTTTCGAGATGATTTCTGGGGAGTGGAGACATCCTCTTGTGACTCAACTGCAGATAAGCCTATGGAGATCAATTGTATCGAAATTTCTAGTTCTCCTTCCACTCTAAGGAGAATGAAAAACCAGTATCATCCAAAACCAGACAACTTTATATCGCAAAGAGCTGCTGCAAGAAGATCTCAAACACAGAGGAAGGTTTTAAACAATTCAGTATCCCATCATGAGGCTGAGAAGGAATCGCCTATCATGGAATTAGAAAAAGATCAGAAAAATGCTCAAAATACTAGTTCGAGAGAGAATTTAGAAACCAAAAGCCATCAAACCTCTAATGTCAATAGAAAAGGTTCTTTCATCTGCTTGGAGACACCTTCATCAAGCCAAGGCCCATTTCCTCGCTCGGAGTGTGGTTAG 1512 0.414 MDNTFPILDFMPVGFRFRPTDEELVEHYLKHKLQGDDFPVHIIPELDLCKYEPWEIPAFSVIKSDDPEWFFFSPRDYKYAKSKRFNRATKCGFWKATGNDRKIKTRGTNNVIGTKKTLVFYEGRVPSGVKTSWVIHEYHAVTFDDSQRTFVLCRLMKKAEKKAEGGTDAMICNEGEPSRHIASDYENEATAEGIPDVGGTLPEMNMESIFQEPHQAENYFPSNQQSPVGIEQEASFPNSPLLNAYFRNENSSMQTPLETTEEEDEFVNSILVDGNFFITEERRNAFVNSSTQSESLRRVYYESSDTDAEVASALCGNILDTSTVHNGHSSSGEYHASKMFKSSHGAVHGGTCLPFSIHDASKEKRESTFRDDFWGVETSSCDSTADKPMEINCIEISSSPSTLRRMKNQYHPKPDNFISQRAAARRSQTQRKVLNNSVSHHEAEKESPIMELEKDQKNAQNTSSRENLETKSHQTSNVNRKGSFICLETPSSSQGPFPRSECG 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi223g00066 503 Coils Coil 449 469 - -
Sebi223g00066 503 MobiDBLite consensus disorder prediction 437 453 - -
Sebi223g00066 503 MobiDBLite consensus disorder prediction 421 436 - -
Sebi223g00066 503 SUPERFAMILY NAC domain 9 158 IPR036093 GO:0003677|GO:0006355
Sebi223g00066 503 Gene3D NAC domain 20 163 IPR036093 GO:0003677|GO:0006355
Sebi223g00066 503 MobiDBLite consensus disorder prediction 454 503 - -
Sebi223g00066 503 ProSiteProfiles NAC domain profile. 11 158 IPR003441 GO:0003677|GO:0006355
Sebi223g00066 503 MobiDBLite consensus disorder prediction 405 503 - -
Sebi223g00066 503 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 11 363 - -
Sebi223g00066 503 Pfam No apical meristem (NAM) protein 12 139 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi223g00066 Sebi-Chr223 798206 801137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi223g00066 8 165 NAC Transcription Factor Family AT4G35580 54.601 1.16e-58 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi223g00066 NAM 1.4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi223g00066 - - gsj:114390609 598.201