Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi223g00054 ATGAAGAGCAACAACAACAACGTTGGACAATTTGGGGACACGACAATGACCAAGGTCTTTGTTGGGGGGTTAGCCTGGGAGACTCCTACGGATGCCCTCAGAGACCACTTTGAGAAGTACGGCCAGATCCTTGAAGCTGTCATCATTTCCGATAAGCTCACTGCCAAATCCAAAGGCTATGGCTTTGTGACATTCAAGGAGGCAGAGGCTGCGAAGAAGGCTTGCGAGGATTCAGAAGGTCACATTATCAATGGGCGTCGAGCAAATTGCAATCTGGCTTACATAGGAGCTCGTCGCCCAAGGTCTTCTTCCCCTGCTTCACCACCACCTCCACAACCACAAGAAGGATCAAACGGCGGAGGACCGAACAACAACGCATCAAGGGCACCAGTAAATCACGTGCAGTGGTATTATCCGGTAGGGACACCTGCATCGCCGTTCCATCATCCCCACGCTCACGCCCTTCCTTTCTATGGGTATGCGCCCACCTACATTGCGACGGATTACAATTACAATTACAATCAGAAGCTGAGCTACGGCAGTGGTGGGGCCTACATGAATGGGCACCACCTGTCCCACGTGTACCCGAGGCAGGCTATTGTGGGTGCGAACACATTGATGCCAATGTACCCTGTCTATCAGTGTTATCATCCAACGGAGACCATGGGCGTTCCTGCTCAAATCTTTTATCCAACGGCAGCGAGGCATTTTGCGTCACTGCCAGCAGCATCAGGCATCATGTGCAAACCCGCATCCATCACTCCTCACACAGGTGCATCACATGAAAACATGTCCAACCCAGTCAATGCCTAA 813 0.5166 MKSNNNNVGQFGDTTMTKVFVGGLAWETPTDALRDHFEKYGQILEAVIISDKLTAKSKGYGFVTFKEAEAAKKACEDSEGHIINGRRANCNLAYIGARRPRSSSPASPPPPQPQEGSNGGGPNNNASRAPVNHVQWYYPVGTPASPFHHPHAHALPFYGYAPTYIATDYNYNYNQKLSYGSGGAYMNGHHLSHVYPRQAIVGANTLMPMYPVYQCYHPTETMGVPAQIFYPTAARHFASLPAASGIMCKPASITPHTGASHENMSNPVNA 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi223g00054 270 Gene3D - 2 107 IPR012677 -
Sebi223g00054 270 SMART rrm1_1 18 91 IPR000504 GO:0003723
Sebi223g00054 270 PANTHER BOULE-RELATED 7 230 - -
Sebi223g00054 270 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 19 87 IPR000504 GO:0003723
Sebi223g00054 270 MobiDBLite consensus disorder prediction 98 128 - -
Sebi223g00054 270 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 17 95 IPR000504 GO:0003723
Sebi223g00054 270 SUPERFAMILY RNA-binding domain, RBD 13 123 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi223g00054 Sebi-Chr223 615981 618037 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi223g00054 13 164 C2H2 Transcription Factor Family AT2G19380 28.659 1.25e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi223g00054 - - lang:109337745 343.584