Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi223g00053 ATGTTTCAAAGTATGAACTCACCAGCCCAGCTAAATTGGCCTGCAAATGGTGATGATCCTTGTGGACAGTCTTGGAAAGGCATCACTTGCTCAGGCAACCGAGTCACAGAGATTAAGTTACCTGGTCTTGAACTAACTGGAACTTTGGGTTACCAGCTACAAACCTTGACATCTGTGACAAACCTAGACCTGAGTAACAACAATATTGGTGGCTCCATACCATACGGACTTCCTCCAAATTTGCAGCACCTAAATCTTGCTAATAATAATTTGAATGGCTCCATACCTTATTCTCTTTCTGATATGACTTCACTTATAGACCTGAATCTTGGCCACAATCAACTCCAACAACCAGTGAATGTTGACTTTCAGAAGCTCTCTTCCCTTTCTACATTGGATCTTTCGTTCAATTCTTTAACAGGTGACCTCCCTCAGACTTTGAGCTCACTTTCAAGCATAACCACCATGTATCTGCAAAACAACCAGTTCACAGGAACCATCAATGTCCTCGCTGATCTGCCTCTTGAGAACTTGAATGTAGCAAACAATCATTTCACAGGCTGGGTACCGGAACAATTGAAAAGCATAAACCTGCAAAAGGATGGCAATGCATGGAGCTCAGGACCTGCACCCCCACCTCCTCCCGGGACACCTCCAATAACAAAAGGCAATCGAAGTCACAAGTCTGGTGGACATGGCACCTCATCAGATGCTGGCACAAGTGATGGTGGCAAAAAATCTGGCATCGGAGGTGGTGCCATTGCTGGAATAGTGATCTCCATCTTAGTTGTTGGGGCGATAATAGCATTCTTTCTGGTGAAGAGAAGATCTAAGAAGTCATTTTCAGATGTGGAAAAGCTTGACAATCAGCCCTTGGCTCCTCTTACTTCAAATGAAGTCCATGAAATGAATTCCGTGCAAACTTCTTCTGTAATTGACTTGAAGACATTTGATGCTTCTGAGGCCTCAATCAGTCTTAAACCCCCACCTTTTGATCGTCGTAAATCATTTGACGAGGACGAGTTTCCAAAGAAGCCTGCTATTGTCAAGAAGACTGTAGCATTTCCTGCAAATGTGAAATCATATTCTATAGCTGACCTGCAGATTGCTACTGGAAGCTTCAGTGTGGATCAACTTTTGGGTGAGGGGTCTTTTGGCCGTGTATACCGTGCTCAATTTGATGATGGAAAGGTTCTTGCTGTGAAGAAGATAGATTCATCTGTCCTTCCCAGTGATTTGTCTGATGATTTTGCAGAAGTAGTTTCAAACATCTCCCATTTGCATCATCCCAATGTGACAGAGCTTGTGGGTTATTGTTCAGAGCATGGACAACACCTCCTAGTCTATGAGTTTCATAAAAATGGATCACTGCATGATTTCCTTCACCTACCTGATGAGTATAGTAAACCACTGATATGGAATTCACGTGTCAAGATTGCTTTGGGGACTGCACGTGCTTTAGAGTACCTACACGAAGTTTGTTCACCATCAGTTGTTCACAAGAATATTAAGTCAGCCAACATATTGCTTGATGTTGATCTTAATCCTCATCTCTCAGACAGTAGATTGGCTAGCTATATTCCAAATGCAAACCAGGTATTGAACAACAATGCTGGATCTGGATATGAAGCTCCCGAAGTTGGCTTGTCTGGTCATTACACTCTTAAGAGTGATGTCTACAGCTTTGGAGTTGTCATGTTGGAACTTCTTAGTGGACGGAAACCATTTGATAGCTCAAGGCCAAGGTCTGAGCAGTCTTTGGTTCGATGGGCAACACCTCAACTCCATGACATTGATGCATTAGCTAAAATGGTTGATCCTGCATTGGAAGGACTATACCCTGTCAAGTCTCTTTCTCGATTTGCTGATGTTATTGCTCTTTGTGTTCAGCCGGAACCTGAATTCCGACCACCAATGTCAGAAGTGGTTCAAGCACTGGTTCGATTAGTGCAGCGAACTAACATGAGCAAGCGAACATTTGGAACTGATCAAGGAAAAACCCAACGAGGGGATGATGACCAAGATACACAAGACATGTAA 2040 0.4319 MFQSMNSPAQLNWPANGDDPCGQSWKGITCSGNRVTEIKLPGLELTGTLGYQLQTLTSVTNLDLSNNNIGGSIPYGLPPNLQHLNLANNNLNGSIPYSLSDMTSLIDLNLGHNQLQQPVNVDFQKLSSLSTLDLSFNSLTGDLPQTLSSLSSITTMYLQNNQFTGTINVLADLPLENLNVANNHFTGWVPEQLKSINLQKDGNAWSSGPAPPPPPGTPPITKGNRSHKSGGHGTSSDAGTSDGGKKSGIGGGAIAGIVISILVVGAIIAFFLVKRRSKKSFSDVEKLDNQPLAPLTSNEVHEMNSVQTSSVIDLKTFDASEASISLKPPPFDRRKSFDEDEFPKKPAIVKKTVAFPANVKSYSIADLQIATGSFSVDQLLGEGSFGRVYRAQFDDGKVLAVKKIDSSVLPSDLSDDFAEVVSNISHLHHPNVTELVGYCSEHGQHLLVYEFHKNGSLHDFLHLPDEYSKPLIWNSRVKIALGTARALEYLHEVCSPSVVHKNIKSANILLDVDLNPHLSDSRLASYIPNANQVLNNNAGSGYEAPEVGLSGHYTLKSDVYSFGVVMLELLSGRKPFDSSRPRSEQSLVRWATPQLHDIDALAKMVDPALEGLYPVKSLSRFADVIALCVQPEPEFRPPMSEVVQALVRLVQRTNMSKRTFGTDQGKTQRGDDDQDTQDM 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi223g00053 679 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 338 451 - -
Sebi223g00053 679 MobiDBLite consensus disorder prediction 657 679 - -
Sebi223g00053 679 Pfam Leucine Rich Repeat 80 100 IPR001611 GO:0005515
Sebi223g00053 679 Pfam Leucine Rich Repeat 128 150 IPR001611 GO:0005515
Sebi223g00053 679 Pfam Leucine rich repeat N-terminal domain 4 31 IPR013210 -
Sebi223g00053 679 PANTHER LEUCINE RICH REPEAT KINASE 2 33 654 - -
Sebi223g00053 679 MobiDBLite consensus disorder prediction 200 244 - -
Sebi223g00053 679 SUPERFAMILY Protein kinase-like (PK-like) 356 646 IPR011009 -
Sebi223g00053 679 Pfam Protein tyrosine and serine/threonine kinase 376 646 IPR001245 GO:0004672|GO:0006468
Sebi223g00053 679 Gene3D Transferase(Phosphotransferase) domain 1 453 673 - -
Sebi223g00053 679 MobiDBLite consensus disorder prediction 222 242 - -
Sebi223g00053 679 PRINTS Leucine-rich repeat signature 59 72 - -
Sebi223g00053 679 PRINTS Leucine-rich repeat signature 126 139 - -
Sebi223g00053 679 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 452 660 - -
Sebi223g00053 679 Gene3D Phosphorylase Kinase; domain 1 340 451 - -
Sebi223g00053 679 SUPERFAMILY L domain-like 5 193 - -
Sebi223g00053 679 Gene3D Ribonuclease Inhibitor 1 231 IPR032675 -
Sebi223g00053 679 ProSitePatterns Protein kinases ATP-binding region signature. 380 403 IPR017441 GO:0005524
Sebi223g00053 679 ProSiteProfiles Protein kinase domain profile. 374 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi223g00053 679 MobiDBLite consensus disorder prediction 664 679 - -
Sebi223g00053 679 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 1 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi223g00053 Sebi-Chr223 599326 605939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi223g00053 1 678 Strubbelig Receptor Gene Family AT1G53730 69.287 0.0 865
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Sebi223g00053 PK_Tyr_Ser-Thr 2.7e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi223g00053 - - gmx:100780323 1056.97