Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi223g00052 ATGGCACCTGAACACGAAGACGATCTCAAGGACGAGAAGAATCCCCGACCCCTTGACGAGGATGACATCGCCCTCCTCAAAACTTACGGTTTGGGACCTTATTCCACAAGCATAAAAAAAGCGGAGAAGGAAATCAAAGATATGGCAAAGAAAGTGAATGACTTATGTGGTATCAAGGAGTCTGACACTGGTTTAGCTGCACCAAGCCAATGGGATCTTGTTTCTGATAAGCAAATGATGCAAGAGGAGCAACCTCTTCAGGTGGCAAGATGCACCAAGATTATAAATCCAAACTCTGAAGATGCCAAATATGTTATAAATGTGAAGCAGATTGCAAAGTTTGTTGTTGGGTTAGGGGACAAAGTTTCACCCACTGATATAGAGGAAGGAATGCGTGTTGGGGTTGATAGAAACAAATATCAGATTCAGATTCCTTTGCCTCCAAAAATTGATCCTAGTGTTACCATGATGACAGTTGAAGAGAAGCCAGATGTGACATATAATGATGTTGGTGGTTGTAAAGAGCAGATTGAAAAGATGCGTGAAGTTGTTGAACTTCCCATGCTTCATCCAGAGAAATTTGTCAAGCTTGGAATTGATCCTCCAAAGGGTGTTCTTTGTTATGGCCCGCCAGGAACTGGCAAAACACTTTTAGCCAGGGCTGTGGCTAATAGGACTGATGCTTGTTTTATTAGGGTTATTGGAAGTGAGCTAGTTCAGAAATATGTTGGTGAAGGGGCTCGGATGGTTCGTGAACTATTTCAGATGGCTCGTTCAAAGAAGGCATGTATTGTGTTTTTTGATGAAGTTGATGCAATTGGAGGTGCTCGATTTGATGATGGTGTTGGTGGTGACAATGAGGTTCAGCGTACAATGCTTGAAATTGTGAATCAACTTGATGGATTTGATGCTCGAGGAAACATCAAAGTTTTGATGGCAACTAACAGGCCTGACACTCTAGATCCAGCACTACTCCGGCCTGGGCGATTGGATCGTAAAGTGGAATTTGGCCTTCCTGATTTAGAGAGTAGGACGCAGATATTCAAGATACATACAAGAACCATGAACTGTGAAAGGGATATCCGTTTTGAACTTTTAGCTCGGCTTTGCCCAAATTCCACTGGAGCTGATATAAGGAGTGTATGCACTGAGGCTGGTATGTATGCTATCCGTGCCCGAAGGAAGACTGTAACAGAGAAAGACTTCCTTGATGCAAGACCATATTTTAGCACGTACAATATTTATTTTCCCCAGTGA 1257 0.4272 MAPEHEDDLKDEKNPRPLDEDDIALLKTYGLGPYSTSIKKAEKEIKDMAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFQMARSKKACIVFFDEVDAIGGARFDDGVGGDNEVQRTMLEIVNQLDGFDARGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLESRTQIFKIHTRTMNCERDIRFELLARLCPNSTGADIRSVCTEAGMYAIRARRKTVTEKDFLDARPYFSTYNIYFPQ 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi223g00052 418 ProSitePatterns AAA-protein family signature. 308 326 IPR003960 GO:0005524|GO:0016887
Sebi223g00052 418 MobiDBLite consensus disorder prediction 1 20 - -
Sebi223g00052 418 Pfam AAA+ lid domain 360 403 IPR041569 -
Sebi223g00052 418 CDD RecA-like_PAN_like 166 336 - -
Sebi223g00052 418 Gene3D - 339 407 - -
Sebi223g00052 418 FunFam 26S protease regulatory subunit 7 158 337 - -
Sebi223g00052 418 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 11 405 - -
Sebi223g00052 418 SMART AAA_5 201 340 IPR003593 GO:0016887
Sebi223g00052 418 Pfam ATPase family associated with various cellular activities (AAA) 205 337 IPR003959 GO:0005524|GO:0016887
Sebi223g00052 418 FunFam 26S protease regulatory subunit 7 33 157 - -
Sebi223g00052 418 FunFam 26S protease regulatory subunit 7 339 407 - -
Sebi223g00052 418 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 410 IPR027417 -
Sebi223g00052 418 Gene3D - 158 337 IPR027417 -
Sebi223g00052 418 Gene3D - 33 157 IPR012340 -
Sebi223g00052 418 Coils Coil 38 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi223g00052 Sebi-Chr223 588468 592288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi223g00052 168 391 Calmodulin-binding Proteins AT3G56690 36.889 1.30e-41 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi223g00052 K03061 - gmx:100779787 810.061