Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi223g00049 ATGGCAGCCATCCTCAATTTCATCACAACCATTGTTGTTGTGGTTCACTCATTGCAAGAAAACATGATCCAAAGGCTGCATAAACTGTATAAGCATTCTGCTGCAGTGAAGGAAACAGAACAGGTTGAAAGTGATTGTTGTGCTGTGTGTCTAAACCAAATGTCTAGAGGGGAAAAGGTTCGGTCTCTTCCCCTTTGCAACCACAGATATCATGCTGATTGTATTGGTGCTTGGTTGAAGAATCACACCACATGCCCTCTTTGTAGGAACAAAATCACTGACCATGTTCCCCAGAATCAACATAAACAGGTGATGAAACCCTTTAAAGAATCTATGATTGGTTTCATACAGAGATTCTCTGATCTATTGGTTGTTCTTCTCTACACAATACTTCCATCTAGTATCACTGAGACTTTCCCCTTGGTTCATTGA 432 0.4074 MAAILNFITTIVVVVHSLQENMIQRLHKLYKHSAAVKETEQVESDCCAVCLNQMSRGEKVRSLPLCNHRYHADCIGAWLKNHTTCPLCRNKITDHVPQNQHKQVMKPFKESMIGFIQRFSDLLVVLLYTILPSSITETFPLVH 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi223g00049 143 SUPERFAMILY RING/U-box 36 96 - -
Sebi223g00049 143 ProSiteProfiles Zinc finger RING-type profile. 47 89 IPR001841 -
Sebi223g00049 143 CDD RING-H2_PA-TM-RING 46 89 - -
Sebi223g00049 143 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 17 93 IPR044675 -
Sebi223g00049 143 Pfam Ring finger domain 46 89 IPR001841 -
Sebi223g00049 143 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 12 95 IPR013083 -
Sebi223g00049 143 SMART ring_2 47 88 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi223g00049 Sebi-Chr223 551271 551702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi223g00049 47 101 C3H Transcription Factor Family AT1G53820 46.154 7.32e-17 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi223g00049 - - gmx:100500375 191.045