Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi223g00048 ATGGGTGCTACTTCAGGGTCAAGTGACACCTTGGGTGACTCTGATACCGTTGAGATAACGGGAAAGATCATGGTGGTAGCTGTGATTTTCCTCTTCATGGTGGTTGTGTTTGTTCTCTTGCTCCATCTCTATGCCAAATGGTTCTGGTGGCGCATTGAGGAAAGCACTGCTCCTCAATCACGCAACCGCCGCAGGCGGCGGCGGTTTGTGTTTGCCCCTGGTCAAGACCCTGTCATCTATGGCTCTCACCAAATTGGTCTTGACCCTGCAGTTCTTAAATCCTTGCCAGTTTTAGTTTTCCAACCAGAGGACTTCAAAGATGGTTTGGAATGTGCAGTTTGTCTCTCTGAGATTGTTGAAGGGGAAAAGGCCAGGCTTTTACCTAAATGCAATCATGGGTTTCATGTAGATTGCATAGATATGTGGTTCCAATCCCATTCTACCTGTCCTCTTTGTAGGAACCCAGTTGCCCCTGAAACCTCTAAACCAATTAATAGCAGTTCAAATGCTGAAGAGAATGTGTCAGGGAATAGTGAGCCTTCAGAAGCAGAAAATTCAGGTGATGTGAGTGGCTTGGAGTCTTCAAATTTTCCCACAAATGTGTTAGTTTGGGGGAACCAGACACAAGTGAGTTCTTTTGGTGCTTCCTTGGAAGAAGGCACTTCTCAGCAGCTACCTTGCTCCCCATCATCTTCTTCAGCCAGTGAAAGCACTAATAGTAGATGTCATGGAATGTTGGCGATTGATATACCAAGTGAATTCACTTCATCCTCTTTATCACCTTCTGCTGGTAGATGTGCTGAAGATGAGATGAAATCACCAATGACAGCAAGACTGAGGTCATTTAAGAGGCTTTTAAGCAGGGACAAAAAATTAAGTCCTTGTAGTCCCAGTTCAATGGATGTTGAACAAGCACAGAGCTAG 924 0.4513 MGATSGSSDTLGDSDTVEITGKIMVVAVIFLFMVVVFVLLLHLYAKWFWWRIEESTAPQSRNRRRRRRFVFAPGQDPVIYGSHQIGLDPAVLKSLPVLVFQPEDFKDGLECAVCLSEIVEGEKARLLPKCNHGFHVDCIDMWFQSHSTCPLCRNPVAPETSKPINSSSNAEENVSGNSEPSEAENSGDVSGLESSNFPTNVLVWGNQTQVSSFGASLEEGTSQQLPCSPSSSSASESTNSRCHGMLAIDIPSEFTSSSLSPSAGRCAEDEMKSPMTARLRSFKRLLSRDKKLSPCSPSSMDVEQAQS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi223g00048 307 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 88 161 IPR013083 -
Sebi223g00048 307 SUPERFAMILY RING/U-box 91 159 - -
Sebi223g00048 307 CDD RING-H2_EL5-like 110 153 - -
Sebi223g00048 307 MobiDBLite consensus disorder prediction 214 240 - -
Sebi223g00048 307 Pfam Ring finger domain 110 153 IPR001841 -
Sebi223g00048 307 MobiDBLite consensus disorder prediction 292 307 - -
Sebi223g00048 307 MobiDBLite consensus disorder prediction 288 307 - -
Sebi223g00048 307 MobiDBLite consensus disorder prediction 160 193 - -
Sebi223g00048 307 FunFam RING-H2 finger protein ATL3 80 158 - -
Sebi223g00048 307 ProSiteProfiles Zinc finger RING-type profile. 111 153 IPR001841 -
Sebi223g00048 307 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 196 - -
Sebi223g00048 307 SMART ring_2 111 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi223g00048 Sebi-Chr223 538679 539602 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi223g00048 18 290 C3H Transcription Factor Family AT1G53820 46.102 1.58e-68 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi223g00048 - - gmx:100775523 415.616