Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi223g00041 ATGGATACTATCAAGTCCTTCAAGGGGTACGGCAAAGTAGATGAGATAGAGCAACAAGCCTTTCAGAAGAAGACACGTAAGCGTGTGATAATCCTGATCGTCTCCTCCTTAGTTCTATTAGCGTTGATCATCGCCGCGGTAGTAGGAGTCGTCGTACACAAGCGCAACACCTCATCATCCTCCCCATCCGACTCGGCTCCACAGACCGAGTTAACCCCGGCCGCGTCACTCAAAGCGGTTTGCGAGGTGACTCAGTACCCTGACTCGTGCTTCGCCACTATCTCCTCCCTCCCAAACTCCAACATCACCCACCCCGAAGCACTCTTCAGGCTCTCCCTGCGCGTCGCCATTGATGAACTCTCGAAGCTCAAGAGCCTCCCTTCGAAGCTCAATGCCAATGGCGACAAGCGTCTCCAGAAGGCGATTGATGTTTGCGCCGTCGTCTTCGACGACGCGCTGGACCGCCTCAACGACTCGATCTCCTCGATCTCTAGCGCCGGAAATATCCTCTCTCCGACGACTGTCGATAACGTCAGGACCTGGCTCAGCGCCGCCATCACGAACCACGACACGTGCCTGGACGCCATCGGCGAGTTGAACTCCACCGCCGCGCACGGCGTTCTTCAGCAAATGGAGGCCGCAATGAAGAACTCCACGGAGTTCTCGAGCAACAGTTTGGCGATCGTAACCAGGATCCTAGGGTTGCTGGCGAAGGTCGGCGCGCCGATCCACAAACGGAGGCTGCTCGGAGAGTTCCCGGAGTGGGTGGGAGCAGCGGAGAGGAGGCTGCTGGCGGCGGATGGCAACGAGACGAAGCCGGATGCGGTGGTGGCGAAGGACGGGAGCGGACAGTACACGACGATCGGAGAGGCGCTGAAGGCGGTGAAGAAGAAGAGCGAGAAGAGATTCGTGGTGTATGTGAAGAAAGGAGATTACGTGGAGAACATCGATTTGGACAAGCATACCTGGAATGTGATGATCTACGGCGATGGCATGACGGAAACCGTCATCTACGGTAGCCGGAATTTCATGGACGGCACGCCCACTTTTGAAACTGCCACTTTCGCTGTTAAGGGGAAGGGATTCATTGCCAAAAATATCAAGTTTGTGAACACTGCAGGTGCATCTAAGCACCAGGCTGTGGCATTGCGTTCTGGCTCGGATCGCTCAGTGTTTTACAGGTGCTCATTTGATGGGTTTCAGGACACCCTTTATGCACATTCTATGCGCCAGTTCTACCGTGAGTGTGAAATTACAGGCACCATAGACTTCATATTTGGCAATGGAGCTGCTATCTTCCAAAATTGCAAAATCATGCCTAGACAGCCTCTACCAAACCAGTTCAACACCATCACAGCTCAGGGCAAGAAGGACCCCAACCAGAACACTGGAATTGTAATCCAAAAATCAACGATCACTACCCTAGACAATGACAATCTCACTGCTCCCACATACCTTGGTAGGCCATGGAAGGATTACTCCACCACTGTTATCATGCAAACTGATATTGGGTCATTCTTGAAACCAGTAGGGTGGATGAGTTGGGTTGCCAATGTGGACCCTCCAAGTACCATCCTCTATGCTGAATACCAGAACAGTGGGCCAGGATCAGATGTGTCCCAGAGGGTCAAATGGGCTGGTTACAAGCCCACTCTCGCGGACGATGTGGCAGGGAAGTTCACGGTGGAGTCCTTTATCCAAGGCCCTGAGTGGTTGCCAAATGCTGATGTGCAGTTTGAGTCTACTTTGTGA 1752 0.5325 MDTIKSFKGYGKVDEIEQQAFQKKTRKRVIILIVSSLVLLALIIAAVVGVVVHKRNTSSSSPSDSAPQTELTPAASLKAVCEVTQYPDSCFATISSLPNSNITHPEALFRLSLRVAIDELSKLKSLPSKLNANGDKRLQKAIDVCAVVFDDALDRLNDSISSISSAGNILSPTTVDNVRTWLSAAITNHDTCLDAIGELNSTAAHGVLQQMEAAMKNSTEFSSNSLAIVTRILGLLAKVGAPIHKRRLLGEFPEWVGAAERRLLAADGNETKPDAVVAKDGSGQYTTIGEALKAVKKKSEKRFVVYVKKGDYVENIDLDKHTWNVMIYGDGMTETVIYGSRNFMDGTPTFETATFAVKGKGFIAKNIKFVNTAGASKHQAVALRSGSDRSVFYRCSFDGFQDTLYAHSMRQFYRECEITGTIDFIFGNGAAIFQNCKIMPRQPLPNQFNTITAQGKKDPNQNTGIVIQKSTITTLDNDNLTAPTYLGRPWKDYSTTVIMQTDIGSFLKPVGWMSWVANVDPPSTILYAEYQNSGPGSDVSQRVKWAGYKPTLADDVAGKFTVESFIQGPEWLPNADVQFESTL 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi223g00041 583 ProSitePatterns Pectinesterase signature 2. 418 427 IPR033131 -
Sebi223g00041 583 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 233 IPR035513 -
Sebi223g00041 583 Pfam Plant invertase/pectin methylesterase inhibitor 77 228 IPR006501 GO:0004857
Sebi223g00041 583 Gene3D - 268 583 IPR012334 -
Sebi223g00041 583 CDD PMEI-like_3 79 232 - -
Sebi223g00041 583 FunFam Pectinesterase 73 233 - -
Sebi223g00041 583 SMART PMEI_2 72 228 IPR006501 GO:0004857
Sebi223g00041 583 FunFam Pectinesterase 268 583 - -
Sebi223g00041 583 NCBIfam pectinesterase inhibitor domain 60 230 IPR006501 GO:0004857
Sebi223g00041 583 PANTHER PECTINESTERASE 40 573 - -
Sebi223g00041 583 Pfam Pectinesterase 274 568 IPR000070 GO:0030599|GO:0042545
Sebi223g00041 583 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 77 233 IPR035513 -
Sebi223g00041 583 SUPERFAMILY Pectin lyase-like 272 580 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi223g00041 Sebi-Chr223 467830 470820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi223g00041 1 577 Carbohydrate Esterase AT1G53840 57.770 0.0 684