Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi223g00032 ATGGCTTCTAATTCTTCTCAAGGAAAGACATCAAAAAAGCCAATCACAAGGAGGCGAAAGATCGAGATCAAGAAAGTGGAAGAACTGAACAAGCGTCACGTGACTTTCTCGAAAAGGAAGCTTGGCCTTTTCAACAAAGTAACTGAGCTATCCATTCTATGCCAAGCAGAAACTGCATTGATCGTTACCTCTCCCAACGGCAAGCTCTATGCATGTGGTTATCCAAACCCTGACACTGTCATAAAACGGTTTCTCACCCAAGGTCCACCTTTGAGGAAAAAAGACAGCAACAAGAAGAAGAAGCCGTTGAAATCCTAA 318 0.4308 MASNSSQGKTSKKPITRRRKIEIKKVEELNKRHVTFSKRKLGLFNKVTELSILCQAETALIVTSPNGKLYACGYPNPDTVIKRFLTQGPPLRKKDSNKKKKPLKS 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi223g00032 105 Gene3D - 30 104 IPR036879 GO:0003677|GO:0046983
Sebi223g00032 105 SMART madsneu2 16 75 IPR002100 GO:0003677|GO:0046983
Sebi223g00032 105 MobiDBLite consensus disorder prediction 85 105 - -
Sebi223g00032 105 PRINTS MADS domain signature 18 38 IPR002100 GO:0003677|GO:0046983
Sebi223g00032 105 PRINTS MADS domain signature 38 53 IPR002100 GO:0003677|GO:0046983
Sebi223g00032 105 PRINTS MADS domain signature 53 74 IPR002100 GO:0003677|GO:0046983
Sebi223g00032 105 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 71 IPR002100 GO:0003677|GO:0046983
Sebi223g00032 105 SUPERFAMILY SRF-like 17 88 IPR036879 GO:0003677|GO:0046983
Sebi223g00032 105 ProSiteProfiles MADS-box domain profile. 16 76 IPR002100 GO:0003677|GO:0046983
Sebi223g00032 105 PANTHER MADS BOX PROTEIN 18 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi223g00032 Sebi-Chr223 355775 356092 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi223g00032 18 87 Type I MADS-box Gene Family AT2G34440 50.000 3.81e-21 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi223g00032 SRF-TF 3.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi223g00032 - - aip:107627188 127.102