Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi223g00030 ATGGCTTACCGTTATGATTTAATCTGTAATGTGAATGGAGGCTCTGAGCATAAGATATGGAGAATTAAAGTCAGAGTCATTAGGCTATGGAGGTCTTCATATTTTAAGGATAACAATAATAAACCAATGATTGAATTGGTTGTTTTGGACGAACAGGGAGGTCGTATCCAATGCACGGTGAAGAGCATTCATGTGTATCTGTTTGAGAATAGTATCAACGAAGGTAATGTGTACATGCTAGAAAACCTCAGCGTTGCACTTAACAGTGGAAAGTACAAACCTACAATGCATGAATTTAGAATGTTCTTCAAGAGAGAGACACGAGTTACTCTGGTAGAAGATTCTTCCATTCCCCTCTATGGTTTTTCATTTGTCCCATTCGTTGAAATATTGAATGAAACTAAGGACGACAGACGTTTGGTTGATGTACTAGGTGTTGTTACTGGGAAAGGTAATCTGATTGAGTTCAAGAAAGAGGGAAAGCCATGCAACTACGTTGTCATAGAGTTGGAAAATATTGAGGAAGGTCTTAAACTTAGGTGTACTTTATGGGAGGACTATGCTTTTATGTTTTTGAAACATTTGGAAGACCATCCATCTGAGTCCTATGTTGTTGTTCTTCAATTTGCAAAAATGAAAAATTTTAAAGGGTCAGTAGGTGTTTCAAACACAACTTACAACTCTAAGTTGTTTATCAATGCCAATATTCCTGAAATTGAAGACTTTCAAATGAGGTTGAAATCTTCTGATTCTCAACAAGGTATTCAGTTTAGTCAGTTAAGTGATCATGCTTCTTTGACCCTTGAGGAAGAATTTCTTGAAAGAGGAGTGTACAAATCAATTGTTGATTTGAAAGAAAATTCTGTTTTTGTAACAATTGGGACTGTTAAGGACATTGAGTCTGAATATAACTGGTGCTATCGTGCCTGTAAGAAATGTTCTCTTGGTTTGAAGTTGGATGGGTCTATGTTCTATTGTAAAAAATGTGTCACTCATTATTCAACTTTTGTGACAAGATATTCTATTCAGCTTCGTGTAGTGGATGAGACAGATTCTGCATCTTTTATCTTATTTGATAAAGAAGCCTCAAATTTCCTGAAAATTCCTGCATATGAACTTCGCACTTCATATATTGCCAAGGGTGGAGATAAGAATAGGCATCCCGAAGAGATTGATTCCTTTAAAGATAAGAAATTCCTTTTAAAAGTGCAAGTTAAGATTCAAGATATGGAGTCAATTGTTCCTTATGTCATTAGTATTTCAAGGCTTTGTTTTGAAGATAACATTATAGCTTCCTTTGAAAAGAAATACCAAATTGAAGAGGTAGCATTAATTCAAGACAACTCTGAACTTTTGAGTCAGTTTACTGAGTCCTCAGATATGTTGAAGGACAATTTATCTGTGTCATGTGATAATGGAGTAGATACTCCAAGTCCCCTTTTACCGACTGGAAAAACGGCATCGAATATGGATTCAAGTGTTATAAAGGTTCTTGATGTGGATCTTGCTGAGTATTGTGGAAATGCAAGTTTTGATACTCCCTCAAAATGCAAGGGTGAGATGCATTCTGAACAGACCATAGTTCGCGTTGCTGTTCATGGTGATGAACAATCTGCTAAGAAGCTGAGGAAAGTTATCAAGGAAAAGAAGAATTAG 1656 0.3605 MAYRYDLICNVNGGSEHKIWRIKVRVIRLWRSSYFKDNNNKPMIELVVLDEQGGRIQCTVKSIHVYLFENSINEGNVYMLENLSVALNSGKYKPTMHEFRMFFKRETRVTLVEDSSIPLYGFSFVPFVEILNETKDDRRLVDVLGVVTGKGNLIEFKKEGKPCNYVVIELENIEEGLKLRCTLWEDYAFMFLKHLEDHPSESYVVVLQFAKMKNFKGSVGVSNTTYNSKLFINANIPEIEDFQMRLKSSDSQQGIQFSQLSDHASLTLEEEFLERGVYKSIVDLKENSVFVTIGTVKDIESEYNWCYRACKKCSLGLKLDGSMFYCKKCVTHYSTFVTRYSIQLRVVDETDSASFILFDKEASNFLKIPAYELRTSYIAKGGDKNRHPEEIDSFKDKKFLLKVQVKIQDMESIVPYVISISRLCFEDNIIASFEKKYQIEEVALIQDNSELLSQFTESSDMLKDNLSVSCDNGVDTPSPLLPTGKTASNMDSSVIKVLDVDLAEYCGNASFDTPSKCKGEMHSEQTIVRVAVHGDEQSAKKLRKVIKEKKN 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi223g00030 551 CDD RPA1_DBD_C 289 408 IPR047192 -
Sebi223g00030 551 Pfam Replication factor-A C terminal domain 290 408 IPR013955 -
Sebi223g00030 551 CDD RPA1_DBD_B_like 142 247 - -
Sebi223g00030 551 Pfam Domain of unknown function DUF223 45 136 IPR003871 -
Sebi223g00030 551 SUPERFAMILY Nucleic acid-binding proteins 122 248 IPR012340 -
Sebi223g00030 551 CDD RPA1_DBD_A_like 21 109 - -
Sebi223g00030 551 Gene3D - 116 257 IPR012340 -
Sebi223g00030 551 SUPERFAMILY Nucleic acid-binding proteins 279 413 IPR012340 -
Sebi223g00030 551 Gene3D - 8 115 IPR012340 -
Sebi223g00030 551 PANTHER OS03G0429900 PROTEIN 19 426 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi223g00030 551 SUPERFAMILY Nucleic acid-binding proteins 8 115 IPR012340 -
Sebi223g00030 551 Gene3D - 266 433 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi223g00030 Sebi-Chr223 319495 322074 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi223g00030 20 373 Core DNA Replication Machinery Family AT2G06510 25.065 2.79e-19 89.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi223g00030 - - adu:107477146 458.373