Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi223g00026 ATGTGTGGAGGTGCTATTATCTCCGACTTCATCCCGGCGGCGACCGGTGGTTCCCGCCGTGTGACCGCCGACATCCTCTGGCCGAATTTGAGGAAACCAAGTTCGAAGAAGCAGCTGCCTAGGAAGGCAGCACTGTTTTTGGATGATGACTTCGAGGCTGGTTTCAGAGAATTCAAGGATGATTCTGACTTCGAAGAGGACGAGGAAGATGATGATTTGCTGGTCGGTGTTAAGGGCTTTGCCTTTGATTCCACCAAGACCAAGCCTTCCAAGTCCTTCTCTCGGGGATCAACTGCTGCAAAACCTGTGGAATTCAGTGTCCAAGCTGATGAGTCTGCTAAGAGAAAGAGGAAGAATCAGTATAGGGGGATCCGCCAGCGTCCATGGGGAAAATGGGCAGCTGAGATCCGTGACCCAAGAAAGGGGGTTCGTGTTTGGCTTGGAACCTTCAACACTGCTGAGGAAGCTGCAAGAGCTTATGATGCTGAAGCTAGGAGGATCCGTGGCAAGAAAGCCAAGGTGAACTTCCCTGATGGGGCTGCTGGTTCTTCCTCAAAACGTGTCAAGGCCAATCCACAGAAGGAAAATGTTAACTCTGTTAAGCCCAAAGTGAACAAGATGTTCAATTTTGGTGACAACTTGGAGGACTTTTACTCCATGGATCAGATGGAACAGAAGCCACTTGTTAACCAATATGCTAACATGGGCCCCTTCCCTGGAAACGGAGTTCAGCTCTCACCCCTTGCTGCATCTACTGATGTCACCCCTTATTTCAGCTCAGAGCATTCGAGCAATTCATTTGATTATTCTGATCTTGGATGGGGTGAACAGGGCCCAAAGACTCCTGAGATCTCATCCATGCTTTCAGCTCCTCTGGAAGGTGAATCTCAGTTTGTGCAGAGTGCCAATCAGCAGAACAACCTGCAGTCTGACTCCCAGGAACTGCTTCCCATGCAAGATGATTCTGCAAAGTCACTGTCTGAGGAGCTTGCTGATATTGAATCCCAGCTGAAGTTCTTTGAGACCCCTTATCTTGATGGAAGTTGGGATGATGCTTCATTGGCTTCCTTGCTGAATGGAGATGCAACTCAGGATGGTGGAAACTCAATGAACCTTTGGAGCTTTGATGACCTGCCTTCCATTGCAGGGGGGGGTTTTCTGAGAAACTTCTTTGTCTCCCCAGTTGTGTAA 1191 0.4903 MCGGAIISDFIPAATGGSRRVTADILWPNLRKPSSKKQLPRKAALFLDDDFEAGFREFKDDSDFEEDEEDDDLLVGVKGFAFDSTKTKPSKSFSRGSTAAKPVEFSVQADESAKRKRKNQYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGKKAKVNFPDGAAGSSSKRVKANPQKENVNSVKPKVNKMFNFGDNLEDFYSMDQMEQKPLVNQYANMGPFPGNGVQLSPLAASTDVTPYFSSEHSSNSFDYSDLGWGEQGPKTPEISSMLSAPLEGESQFVQSANQQNNLQSDSQELLPMQDDSAKSLSEELADIESQLKFFETPYLDGSWDDASLASLLNGDATQDGGNSMNLWSFDDLPSIAGGGFLRNFFVSPVV 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi223g00026 396 SMART rav1_2 120 183 IPR001471 GO:0003700|GO:0006355
Sebi223g00026 396 CDD AP2 120 178 IPR001471 GO:0003700|GO:0006355
Sebi223g00026 396 Gene3D AP2/ERF domain 119 178 IPR036955 GO:0003700|GO:0006355
Sebi223g00026 396 PRINTS Ethylene responsive element binding protein signature 143 159 IPR001471 GO:0003700|GO:0006355
Sebi223g00026 396 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Sebi223g00026 396 FunFam Ethylene-responsive transcription factor 2 119 178 - -
Sebi223g00026 396 PANTHER DNA-BINDING DOMAIN 92 300 IPR044808 GO:0003700|GO:0009873
Sebi223g00026 396 MobiDBLite consensus disorder prediction 175 195 - -
Sebi223g00026 396 SUPERFAMILY DNA-binding domain 120 178 IPR016177 GO:0003677
Sebi223g00026 396 Pfam AP2 domain 120 169 IPR001471 GO:0003700|GO:0006355
Sebi223g00026 396 ProSiteProfiles AP2/ERF domain profile. 120 177 IPR001471 GO:0003700|GO:0006355
Sebi223g00026 396 MobiDBLite consensus disorder prediction 264 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi223g00026 Sebi-Chr223 240724 243426 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi223g00026 1 386 AP2-EREBP Transcription Factor Family AT3G14230 45.301 8.81e-67 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi223g00026 AP2 2.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi223g00026 K09286 - gmx:100818646 492.656