Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi223g00020 ATGTCTTCTTCTGAAAGAAAAGTCTTTGTCCATTGTTCTGTAGGGCTTCGTATTTCAAGCATCGGAGAGGTTGCGGAGCAATTAGTGAGGCAATCGGTGGCTCCTTGCTCGAGTCGAGGTATTTTGAGGCTGTGTATAAGAGGAATGGAACAAATTTCTGGTTGTAGGAGTAATTCGGATACAGAGGGCATGGGAATGGGTGGTTTGAATCTGGGTACAAACAATTCTGTGGATGGAAACGAAACAGATTCTGTTCAGCAAGGTAGTTGTGCGTTTGTTGTGCAGGATGAGACTGGAGGTGTTTTTGTGGTAGATGAGAACTGGGGTGAGGAACATAGTGGTGATACACCTTTGTCAGATCAGAATGGTGAATATGTTGGTGGTTTTTTTTGTAACGATGAAAACGGGGGTGTTTTCTTGGTGGGAGAAGATTGGAATGAGGAAAATGAAGAAGATGATGTGGGTAATTGTGGGCAGGAAAAAATTATACTTGATTCAAATGATGATATACTTAACATGGGTGATCTATCTTTGTTTAGTCCACATGAAATAGAGAAATATGAATTTGGGAATATTGACATAGCATACAAGTTTTACTTTGAATATGGGTTTGCTAATGGGTTTGGGATAAGGAAGGGTCGAACTCTTAAAAAGAAGAACACGTTGGAGGAGTATCAGAAAGAGTTAATGTGTTGTAGAGCTGGTCAGCGTGAAGACCGTGGTCTTAAATTGGAAGATAGGGTCCCTGAACCTAGAGCCTTGACCTCGTTGCATTGCGGCATGCTTCCGGTGTACAGAAGAATGTCTGATAGTGATGTGGTCCAAATGAATAACATGATTAAGGTTGGTATTAGACCGCCAAATATATTCAACACTTTTGCTAACCAGTCTGGAGGATATGAGAAGATAGGTTTCCGGAAGAAAGACATGTATAACAAGATCAGTGAGCAAAGGCGGAGTTTGTGTTCCGATGCAAAAGGAGCTTTGGAATACCTTGGGTTGCTTCGACTAAGTGATAGCATGATGTATTTTGAACACACTGTTGATGGACAAGGAAGGCTGCAACATGTATTTTGGAGCGATGGATATAGCCAAGTGGATTACAGCATTTTTGGGGAAGTTTTGGCCTTTGATGCAACTTATGGCAAAAACAAGTACTTCATGCCACTTGTTGTATTCTCGGGTGTCAACAATCATAATCGTTCAACAATCTTTGCTGCAGCTATTATAGCCAATGAGACTGAGGAGACTTATGTTTGGCTTTTGGAGCAATTTTCCAGATGTATGAAAGGTAAATTACCGAATGCTGTAGTAACGGATGGTGACCTTGCAATGAAAAATGCCATTGAAAGGGTTTTCCCTAATGCTTATCATAGGTTGTGTGCATGGCACTTGATGAGGAATGCAACATGTAATGTAAAAAATGCAGATTTCACCAAAGGATTTGAGGATTGTATGCTTGGTTATTATGATGTGGGGACGTTTAGAAGGAAGTGGTTGGAAGTGGTTGCAAAATGTGGACTTGAAGAAAACCCATGGGTGGCTTCCTTATATGAGAAGAGGAATGTGTGGGCTACAACTTATCTTAGGGGGAAATTTTTTGGTGGGTTTAGAACTACATCAAGGTGTGAGGGATTGCATTCTGAACTTGGAAAATTTGTAAATTCACGTTACAACTTGAGTGACTTCTTGCAACATTTTCAGCGTTGCCTCAATCATATGCGTTTCAAAGAGAAGGAGGACGACTTTACATCAATTCATATGGTCAGCCAAACAGGTAGGAGTGGGGAATGGAGGGTATCGTTGTATGACACAAGCAAGGAATTAAAATGTGCATGCCTCAAAATGGAGTCTAGAGGGTTACCTTGTGAACATATAGTTGCTGTGTTGGCTCATTTAGGGATTGACGAGATCCCTGAATCGTTAGTCCTTAAAAGGTGGAGCAAGGCTGCGAAGGATGGTTTACGTGGTAAAGAATTTGAAGCAAATCATTGTGTGGATGCTGGAAGAAGTGCTAGGAGGGCTGCACTAGCTGGTATATATGACCATGTTAGTGAGTTCCATGCTGCCACCATAGAAAAATTTAATGCTGAACGTGACAGACTTGTTGAGGACTGGACGCAATGTCGGGCTGAATTTGAAAGTGAACCAGAGTTGGGATCGGGTTGTCCCAATTCCAGTCATGAAGGTCCAAGGAACCCAACACGTGCATCAACAAAAGGACATGCTGGTGGTTCATCATCTTCAGGTATAAGATCTAGGAAAAAACAAAATTGTTCCATATGTAAACTCCCTGGACACAACAAAACCACATGTCCAAGTAGTGATGAACAACGTCGTGCCCGGATTCATGACAACGTTGGTGGCTCATCACAAGATAATGAAACTGCTGCGTGTGAAGACTATGAATATTTTGACCCTGAAGCTTGGTTGTGA 2436 0.4171 MSSSERKVFVHCSVGLRISSIGEVAEQLVRQSVAPCSSRGILRLCIRGMEQISGCRSNSDTEGMGMGGLNLGTNNSVDGNETDSVQQGSCAFVVQDETGGVFVVDENWGEEHSGDTPLSDQNGEYVGGFFCNDENGGVFLVGEDWNEENEEDDVGNCGQEKIILDSNDDILNMGDLSLFSPHEIEKYEFGNIDIAYKFYFEYGFANGFGIRKGRTLKKKNTLEEYQKELMCCRAGQREDRGLKLEDRVPEPRALTSLHCGMLPVYRRMSDSDVVQMNNMIKVGIRPPNIFNTFANQSGGYEKIGFRKKDMYNKISEQRRSLCSDAKGALEYLGLLRLSDSMMYFEHTVDGQGRLQHVFWSDGYSQVDYSIFGEVLAFDATYGKNKYFMPLVVFSGVNNHNRSTIFAAAIIANETEETYVWLLEQFSRCMKGKLPNAVVTDGDLAMKNAIERVFPNAYHRLCAWHLMRNATCNVKNADFTKGFEDCMLGYYDVGTFRRKWLEVVAKCGLEENPWVASLYEKRNVWATTYLRGKFFGGFRTTSRCEGLHSELGKFVNSRYNLSDFLQHFQRCLNHMRFKEKEDDFTSIHMVSQTGRSGEWRVSLYDTSKELKCACLKMESRGLPCEHIVAVLAHLGIDEIPESLVLKRWSKAAKDGLRGKEFEANHCVDAGRSARRAALAGIYDHVSEFHAATIEKFNAERDRLVEDWTQCRAEFESEPELGSGCPNSSHEGPRNPTRASTKGHAGGSSSSGIRSRKKQNCSICKLPGHNKTTCPSSDEQRRARIHDNVGGSSQDNETAACEDYEYFDPEAWL 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi223g00020 811 MobiDBLite consensus disorder prediction 716 756 - -
Sebi223g00020 811 SMART 26again6 609 636 IPR006564 GO:0008270
Sebi223g00020 811 PANTHER OS01G0519700 PROTEIN 605 690 - -
Sebi223g00020 811 ProSiteProfiles Zinc finger SWIM-type profile. 598 634 IPR007527 GO:0008270
Sebi223g00020 811 MobiDBLite consensus disorder prediction 768 799 - -
Sebi223g00020 811 MobiDBLite consensus disorder prediction 720 756 - -
Sebi223g00020 811 Pfam SWIM zinc finger 599 633 IPR007527 GO:0008270
Sebi223g00020 811 Pfam MULE transposase domain 374 468 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi223g00020 Sebi-Chr223 181681 184667 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi223g00020 MULE 6.8e-30 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi223g00020 - - tpra:123913749 592.038