Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi223g00005 ATGAGTAAGCTTCAGAGTGATGCTCTAAGAGAAGCTATCTCAGGAATCATGGCTGATTCCAAGGAGAAAAACCGTAAATTTGTGGAGACTATTGAACTCCAAATTGGGTTGAAAAACTACGATCCTCAGAAGGATAAGCGTTTCAGTGGCTCTGTCAAGTTGCCCCACATCCCTCGCCCTAAGATGAAAATTTGCATGCTTGGTGATGCCCAACATGTTGAAGAGGCAGAGAAGATAGGGTTGGACTGGATGGATGTTGAAGCCTTGAAGAAACTAAACAAAAATAAGAAATTAGTGAAGAAACTAGCAAAGAAGTACCATGCCTTTTTAGCTTCTGAAGCAGTTATCAAGCAGATTCCTCGTCTTTTGGGTCCTGGGAAATTCCCTACACTTGTTACTCACCAAGAATCTCTTGAGTCAAAGGTTAATGAGACTAAGGCTATGATCAAATTCCAGCTTAAGAAGGTGCTCTGCATGGGAGTAGCTGTGGGAAATGTTAGTATGGAGGAAAAGCAAATCTTCCAAAATGTACAACTGAGTGTTAACTTCCTTGTCTCCTTGTTGAAAAAGAATTGGCAAAATAATTCCTCTAGCATAGGTGAGGTGCTTGTATCTGAAGAGTACCATGGGGAAATCGTACCGCGTCTTTTAAGGGACTGGTTTTAA 666 0.4129 MSKLQSDALREAISGIMADSKEKNRKFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDWMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGKFPTLVTHQESLESKVNETKAMIKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNNSSSIGEVLVSEEYHGEIVPRLLRDWF 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi223g00005 221 FunFam Ribosomal protein L10a 1 119 - -
Sebi223g00005 221 FunFam Ribosomal protein 132 199 - -
Sebi223g00005 221 Pfam Ribosomal protein L1p/L10e family 22 195 IPR028364 -
Sebi223g00005 221 CDD Ribosomal_L1 9 194 IPR028364 -
Sebi223g00005 221 Gene3D - 131 204 - -
Sebi223g00005 221 Gene3D - 1 119 - -
Sebi223g00005 221 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 202 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Sebi223g00005 221 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 11 187 - -
Sebi223g00005 221 SUPERFAMILY Ribosomal protein L1 21 195 IPR023674 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi223g00005 Sebi-Chr223 40824 42769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi223g00005 1 194 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 86.935 1.53e-110 314
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi223g00005 K02865 - gmx:100499715 352.443