Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi222g00024 ATGGTGCACTATGAGGGTTTGTTTCTAAGGAAGTTCCCAGCTGTGCATGTGGTGAAAAAGAGTGGGTGGAAAGATCTGGAGCAATCAGGTGGCATAGAAGACGGAGATCAACAGCAAAAGGCATTTGATGATGCAAATTACTCATCCTCAGCGATTGAAGGCAAAAGCAACTCAAAGAAGAGGAGGGATATTAAGGATGAGGATGAGGATGGAGAGGACAGGGAGGATATTACCTCGTTAAAGAAGCCGCGGGTTGTTTGGTCTGTTGAGCTTCATCAACAGTTCATGGCTGCTGTGAATCAACTAGGAATTGATAAGGCTGTTCCTAAAAAGATTCTGGAATTGATGAATGTCCCTGGGCTCACTAGAGAAAATGTTGCTAGCCACCTCCAGAGCAACTTTAATAACTCATTCATCAGCTCACAAGATTCAACATTTGGGGCTACTTCAATAAATGGAATAGATCTGCAAACTCTTCCAGTTGCTGGCCAGCTCCAAGCACAAAGTCTAGCCAAGCTTCAAGCAGCAGGACTCGGCAGATCAATTGCAAAAGCAGGTATCCCCATGCCTCTAGTTGAGCAAAAGAACCCTTTCAGTTTTGAGAACTCAAAATTAAGAGCAACAGCTTGCAATTGGTGGAATCAAGTGAGCATGTGTCTGTCAGGGTATGAAATTAAGCAAGGAAATCAAGGTGGCAACACCTTGGAGAAAACTGATGCAACTGGTGAAAATGTAAACGGGGAAGATGCTATTGATGTTGATGACAATGATGAAACTATTGATTGGATTTTGAAGCAGCCTGAACTTGTTTTTGTCATGGAGAAGAATAGTGCAGGCCAAGTGTCAGGCGATGAAGATGTTGCAAAAGGGTCAGTAAGTGGTGTGCAATGCAGTGATAACATAAAGCAAACAGATTCAATCACGCCACAGATTCCATCAATTCGCTCACATAGCTGTGCTCAGCTGGATGCTATTGTGAGAGAACTGCTGAGTAGTGTCGACCTCATGTCGAGGTCTATGCTGGATGTCACTTCTAAGGTGAGTGATCTTGAGAAAAGAATTGTTATCTTGTCCTCCAAGCTGAAAATTCTTAAGTCACAAATTGCTTTAGTTAGAGACACCAACTTGAAGGGAAAAAAAACAACAGTGAGTCCAGGTGAAGGGCTACATGGTTTAGACTCTTCGAAGGAACAATTAAATGAAAATGAAAAGGACAATAAATTTTATGTTGTTTTGTCTGAGGAAGAGGATAGCTTTGAAAGAGCTTTGGTATATACCCCTAAGCAACACGGTCCACCTACATCTGCAACATCATCGAAGGCGTCACCTCCAAAGTTTAAGCATTTTGCCAAAACCGAGTATGACTCATACTATAGCTCTAGCGGGGAGAACATGCTATCTGTTTTGGCTAGTAATCTCCCAGGAGGATTGACAACACAGGAAAATAAATCTGGCAGTGAGAATGTTAGGGATAAGAAGGTTTCTTTCACACCCACAACTAGGGAAAGAAGAACGAAAGACCCAAAGGTTGAAGCTAGCGAAAAGAATACACCTAAAAAGAGAAATGCAGTTGAAATAATGACTTCTAAGGAGGCTACTAAAACGGGAAAGAAACTCAACGAATCTGAAAGTGACACAAAGATTAAGCCCTTTGGCAAAAAGGGACCTAAGTTTGTACGAATAAATTTCAAGCCACTCACGGCAATGCAACTTACTGCGCGGGAGGAGCGATTGTCATTATATGTGTTCCAAGTTAATGGAGATCCAAGTGAGGTGTTGTTCAAGCTTGGAGATTCAACCTTAACTAGGGATGAGATGTCATGGTTTTGCCATCCCAATGAAATAAGGGAAAAGATTGTCAGGTTGGTGTCACTTAAGTTGACATATATCCATCGTCAGGAAAATGGACATTCATTTTGGATTTTACCACCTGAGTTTGTGAATGATGTTTATAAATGGAATGCTGAAACTATACTAGAGAAATATGCAAAAGATTGGATGCCCCCATTATTGGGTCTCAAATATATATATGTCCCAGTGCAAGAATGCACCAGCCAATGGTGGTTGATGGTGATCTCAATAAATGAGAGGGTGGTTTATCATTTGGACTCGTTCTTAGAAGATAGATCTCAACATGCAAGGAAATTGACTATAGACAAAATGTGCATGGTTTTGTCTCAATGCATTGCTTCTTCTGATTACTATCCAACAAAAGATTTCAAGCACATAAACATGGACAAATGGGAAATAAAGGTGTTTGATAAGAACCCATATGAACCATACGGTGAAAACTCAGCTGTGTGGATCATTGAGTGGATGCATATGATGGATGCTTTCCCAACAAACTGTGTCCCAGCGGTTCGAATGAGGATATGTTTGGGACTTTTATGTGGACATCATAATGAGCTATGGCCAGAAATTCAGGAAAAAGCTGACTACTTCTGGGACAATCTCCCGTGA 2460 0.413 MVHYEGLFLRKFPAVHVVKKSGWKDLEQSGGIEDGDQQQKAFDDANYSSSAIEGKSNSKKRRDIKDEDEDGEDREDITSLKKPRVVWSVELHQQFMAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQSNFNNSFISSQDSTFGATSINGIDLQTLPVAGQLQAQSLAKLQAAGLGRSIAKAGIPMPLVEQKNPFSFENSKLRATACNWWNQVSMCLSGYEIKQGNQGGNTLEKTDATGENVNGEDAIDVDDNDETIDWILKQPELVFVMEKNSAGQVSGDEDVAKGSVSGVQCSDNIKQTDSITPQIPSIRSHSCAQLDAIVRELLSSVDLMSRSMLDVTSKVSDLEKRIVILSSKLKILKSQIALVRDTNLKGKKTTVSPGEGLHGLDSSKEQLNENEKDNKFYVVLSEEEDSFERALVYTPKQHGPPTSATSSKASPPKFKHFAKTEYDSYYSSSGENMLSVLASNLPGGLTTQENKSGSENVRDKKVSFTPTTRERRTKDPKVEASEKNTPKKRNAVEIMTSKEATKTGKKLNESESDTKIKPFGKKGPKFVRINFKPLTAMQLTAREERLSLYVFQVNGDPSEVLFKLGDSTLTRDEMSWFCHPNEIREKIVRLVSLKLTYIHRQENGHSFWILPPEFVNDVYKWNAETILEKYAKDWMPPLLGLKYIYVPVQECTSQWWLMVISINERVVYHLDSFLEDRSQHARKLTIDKMCMVLSQCIASSDYYPTKDFKHINMDKWEIKVFDKNPYEPYGENSAVWIIEWMHMMDAFPTNCVPAVRMRICLGLLCGHHNELWPEIQEKADYFWDNLP 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi222g00024 819 MobiDBLite consensus disorder prediction 477 519 - -
Sebi222g00024 819 Coils Coil 347 367 - -
Sebi222g00024 819 SUPERFAMILY Homeodomain-like 80 133 IPR009057 -
Sebi222g00024 819 MobiDBLite consensus disorder prediction 485 519 - -
Sebi222g00024 819 Gene3D Adenoviral Proteinase; Chain A 565 798 - -
Sebi222g00024 819 Gene3D - 78 136 - -
Sebi222g00024 819 MobiDBLite consensus disorder prediction 26 77 - -
Sebi222g00024 819 Pfam Myb-like DNA-binding domain 84 132 IPR001005 -
Sebi222g00024 819 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 42 204 IPR044841 GO:0003700|GO:0006355
Sebi222g00024 819 Pfam Ulp1 protease family, C-terminal catalytic domain 669 767 IPR003653 GO:0006508|GO:0008234
Sebi222g00024 819 FunFam Two-component response regulator 78 135 - -
Sebi222g00024 819 SUPERFAMILY Cysteine proteinases 582 790 IPR038765 -
Sebi222g00024 819 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 81 138 IPR017930 -
Sebi222g00024 819 NCBIfam myb-like DNA-binding domain, SHAQKYF class 82 135 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi222g00024 Sebi-Chr222 1136257 1142829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi222g00024 16 206 Response Regulator Gene Family AT3G16857 52.361 4.32e-56 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Sebi222g00024 Peptidase_C48 0.00025 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi222g00024 - K14491 qsu:112028482 236.884