Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi222g00018 ATGGAGGACTTGAACCAAAACGTTGCTGTCACTGACTCTCCAAGCCTCACCCTGAACAAACCACAAACCAACAATGAGACACCCGTGCAAACCAACTATGGCGAAAACAACGCCGCACTGGAAGGTGTCGGAGTTGAGAATGTTGTCTCTGGCTCTGTCATCTCCGGAGCAAAGTCCGAGAATGGAGGTTCGGAACCAGTGGTGAAGAGGGGGAGGGGAAGACCTCGGAAGTACGATGTTAATGGGAAACTGCTGTCTTCTCCGGCAACACCACCGCCGCCGCCCGGATTTGACATTCAGCCTTATGTTGAAAGCGTTGTCAAGAGAGGCAGGGGACGCCCTCGTGGCACTGGAAAACTGCAGATTCTGGCTTCCATGGGTGGGTATGTTGCAGAAACAGCTGGGGGAAGCTTCATACCTCATGTGCTGACTGTGAACGCTGGGGAGGATGTGGTCAACAAGATAATATCATTTTTTCAGAAAGGCCCTCGCTCAGTTTGCATACTCTCTGCTAATGGTCCTGTATCAAGTGTCACCATTCGCCAACCTGGTCCTGCTGGTGGTTTTTTGAGATATGAGGGCATCTTCGAGATTTTATCTCTATCTGGCTCATGTACCTACACTGGTGCTGGTGGTGCACTTCGAAAAAGTGGCATGTTGAGTGTTTCACTGGCTAAACCTGATGGGAGGGTTTTTGGAGGTGGCATTGAGAGCTCATTGATAGCAGCTGGTCCTATTCAAATTTCTCAATTGATTTCAATGAAGCAACACTATTAA 777 0.4929 MEDLNQNVAVTDSPSLTLNKPQTNNETPVQTNYGENNAALEGVGVENVVSGSVISGAKSENGGSEPVVKRGRGRPRKYDVNGKLLSSPATPPPPPGFDIQPYVESVVKRGRGRPRGTGKLQILASMGGYVAETAGGSFIPHVLTVNAGEDVVNKIISFFQKGPRSVCILSANGPVSSVTIRQPGPAGGFLRYEGIFEILSLSGSCTYTGAGGALRKSGMLSVSLAKPDGRVFGGGIESSLIAAGPIQISQLISMKQHY 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi222g00018 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 34 248 IPR039605 GO:0003680
Sebi222g00018 258 MobiDBLite consensus disorder prediction 65 79 - -
Sebi222g00018 258 ProSiteProfiles PPC domain profile profile. 135 258 IPR005175 -
Sebi222g00018 258 SMART AT_hook_2 69 81 IPR017956 GO:0003677
Sebi222g00018 258 SMART AT_hook_2 108 120 IPR017956 GO:0003677
Sebi222g00018 258 MobiDBLite consensus disorder prediction 54 98 - -
Sebi222g00018 258 Pfam AT hook motif 69 78 IPR017956 GO:0003677
Sebi222g00018 258 Pfam AT hook motif 108 118 IPR017956 GO:0003677
Sebi222g00018 258 MobiDBLite consensus disorder prediction 1 32 - -
Sebi222g00018 258 Gene3D - 140 255 - -
Sebi222g00018 258 CDD DUF296 140 248 IPR005175 -
Sebi222g00018 258 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 248 - -
Sebi222g00018 258 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 248 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi222g00018 Sebi-Chr222 911401 914599 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi222g00018 67 248 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 47.692 1.59e-49 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi222g00018 - - mtr:25492323 247.669