Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi221g00056 ATGGGTTCTCTGTGTTTGGTTGTTTTTCTGGTTTACGTTGATGGGTCATTTGCCTTGTACACTCCTCCTGATAGTTATCTAATTGCTTGTGGTTCTACCCAAAACATCACCTTCCAAGGTCGTACTTTTGTTCCTGATTCACAGCATTCTTCACTTATGTTGAAATCTGGGAATTCTTTTGTTGCTAGTTCCAATTCCAGTGCCCCTTTTCCAATTTATCAATCAGCTCGGGTTTTCACAGAGAAAGCTTCTTACAGGTTTGAAATTCAGCAAGAAGGTAGGCACTGGGTCCGGCTATACTTTTTCCCTCTTCCCAACTCTAGCCATAATTTGTCTTCTGCTTCTATAACAGTGGTTACTGATGATTTTGTCCTCTTGAGCAACTTCACCTTTAACAAATACAATGGTTCTTATATGTTCAAGGAGTATGCAATTAATGTTACATCTGATACATTGACTGTCACCTTCATTCCTTCAAATGGTTCAGTAGCCTTTGTCAATGCAATTGAAGTTGTGTCAATGCCAAATGAGTTGTTTGTTGATCAGGCATTAGCTATTAACCCACCAGCACCATTCAGTGGACTTTCTGAACTTGCCTTTGAAACTGTTTATCGCTTAAACATGGGAGGTCCTTTGATTACTGCCCAAAATGACACCCTAGGAAGGACTTGGGTGAATGATCTGAAATACCTCCATGTGAACAGTTCTGTTCTTAATGTGTCAGTCAATCCTTCAACCATTAAGTATCCGGTAGCTGTTACGCCTGAGACAGCCCCAAATTTGGTCTATGCCACTGCCGATACGATGGGGGATGCTAATGTAAATGATCCAAATTTCAACATTACTTGGGTATTCACTGTGGATCCAAATTTCTCCTATTTTATCCGGACACACTTTTGTGATATCATGAGCAAGTCACTCAACACTTTAGTGTTCAATGTATACATAAATTCTGACATTGCTCTTGGAAGTCTTGACCTCTCAAGCATAACTAATGATATGTCTGTACCTTACTACAAGGACTTTGTTTCCAATGTCTCAGCAGACTCTAACACTTTGACTGTAAGTGTTGGTCCGGATACAATGGCAGATTTCCCAAATGCCACTATGAGTGGATTGGAGATAATAAAGATCAGCAATGCATTGAAGAGTTTGGATGGACTTTCTTCTGTTGACAGTCTTCTTCCTAGTTCACATTCTAAGAAGAACATGATAGGAATAATAGTTGGTTCTGCTGTTGGGGCTCTAGCTGCCATAGTAGTGGTTGGTTTGTGTTGTTGTTGCTTGGTGAGACGCAAGTCAAAGTCTACTCAACAGGGCAATTCATGGCTGCCTTTACCTCTATATGGAAACTCTCTGACCATGACCAAAGGGTCAACAATTTCACAGAAGAGTGGAACTGCAAGCTGCATTTCATTAACTTCAACAAATCTTGGACGATTCTTCAGTTTCCAAGAAATCCTAGATGCAACCAACAAATTTGATGAGAAGCTTCTTCTTGGTGTTGGTGGATTTGGAAGGGTTTATAAGGGAACACTTGAAGATGGGACCAATGTTGCTGTTAAAAGGGGTAACCCAAGATCTGAGCAAGGTCTTGCTGAATTCCGAACAGAAATTGAAATGTTATCCAAGCTTCGCCACCGTCATCTTGTGTCTCTTATTGGTTATTGTGATGAGAGGAGTCATTTGTATGGAACAGACCTGCCACCTCTATCATGGAAGCAGCGGCTTGAAATTTGCATTGGAGCAGCAAGAGGCCTTCATTATCTCCACACTGGAGCAGCTCAAAGCATAATTCACCGAGATGTAAAGACAACGAATATCCTCTTAGATGAGAACTTTGTTGCTAAAGTTGCTGATTTTGGCCTCTCCAAGACTGGTCCTGCTCTTGATCAGACCCATGTGAGCACTGCTGTTAAAGGTAGTTTTGGTTACCTTGATCCTGAATACTTCAGAAGGCAACAGCTTACTGAGAAGTCAGATGTATATTCATTTGGAGTAGTGTTAATGGAAGTGTTATGCACAAGACCAGCCTTAAACCCTGTCCTTCCAAGGGAGCAGGGATGCTTGACCAAATCATGGATAAAAATTGTGGGAAAGGTGAATCCTGCTTCTCTTAAGAAGTTTGGGGAGACAGCTGAGAAGTGCTTAGCTGAGCATGGTGTGGACAGGCCATCTATGGGTGATGTCTTGTGGAATCTTGAATATGCTCTGCAGCTTCAAGAGACCTCATCAGCTCTCATGGAACCAGAAGATAACAGCACAAACCACATCACTGGAATTCAATTGACACCCCTTGAGCATTTTGATAACAGTGTGAGTATGATTGATGTGGGCAACTCTTGCACAGATGATGATGCAGAAGATGCTGCCACAAGTGCAGTGTTCTCACAATTGGTAAATCCTCGTGGAAGATGA 2418 0.4173 MGSLCLVVFLVYVDGSFALYTPPDSYLIACGSTQNITFQGRTFVPDSQHSSLMLKSGNSFVASSNSSAPFPIYQSARVFTEKASYRFEIQQEGRHWVRLYFFPLPNSSHNLSSASITVVTDDFVLLSNFTFNKYNGSYMFKEYAINVTSDTLTVTFIPSNGSVAFVNAIEVVSMPNELFVDQALAINPPAPFSGLSELAFETVYRLNMGGPLITAQNDTLGRTWVNDLKYLHVNSSVLNVSVNPSTIKYPVAVTPETAPNLVYATADTMGDANVNDPNFNITWVFTVDPNFSYFIRTHFCDIMSKSLNTLVFNVYINSDIALGSLDLSSITNDMSVPYYKDFVSNVSADSNTLTVSVGPDTMADFPNATMSGLEIIKISNALKSLDGLSSVDSLLPSSHSKKNMIGIIVGSAVGALAAIVVVGLCCCCLVRRKSKSTQQGNSWLPLPLYGNSLTMTKGSTISQKSGTASCISLTSTNLGRFFSFQEILDATNKFDEKLLLGVGGFGRVYKGTLEDGTNVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSHLYGTDLPPLSWKQRLEICIGAARGLHYLHTGAAQSIIHRDVKTTNILLDENFVAKVADFGLSKTGPALDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEVLCTRPALNPVLPREQGCLTKSWIKIVGKVNPASLKKFGETAEKCLAEHGVDRPSMGDVLWNLEYALQLQETSSALMEPEDNSTNHITGIQLTPLEHFDNSVSMIDVGNSCTDDDAEDAATSAVFSQLVNPRGR 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi221g00056 805 SUPERFAMILY Protein kinase-like (PK-like) 480 750 IPR011009 -
Sebi221g00056 805 Gene3D - 25 175 - -
Sebi221g00056 805 Gene3D - 198 379 - -
Sebi221g00056 805 SMART serkin_6 494 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi221g00056 805 FunFam receptor-like protein kinase FERONIA 456 564 - -
Sebi221g00056 805 Pfam Protein tyrosine and serine/threonine kinase 499 730 IPR001245 GO:0004672|GO:0006468
Sebi221g00056 805 Pfam Malectin-like domain 28 377 IPR024788 -
Sebi221g00056 805 ProSitePatterns Serine/Threonine protein kinases active-site signature. 598 610 IPR008271 GO:0004672|GO:0006468
Sebi221g00056 805 Gene3D Phosphorylase Kinase; domain 1 454 561 - -
Sebi221g00056 805 ProSiteProfiles Protein kinase domain profile. 494 737 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi221g00056 805 PANTHER OS03G0124300 PROTEIN-RELATED 6 442 IPR046957 GO:0004672
Sebi221g00056 805 FunFam Receptor-like protein kinase FERONIA 199 380 - -
Sebi221g00056 805 FunFam Putative receptor-like protein kinase 25 175 - -
Sebi221g00056 805 Gene3D Transferase(Phosphotransferase) domain 1 562 760 - -
Sebi221g00056 805 FunFam Receptor-like protein kinase FERONIA 557 756 - -
Sebi221g00056 805 ProSitePatterns Protein kinases ATP-binding region signature. 500 522 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi221g00056 Sebi-Chr221 937896 940400 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi221g00056 20 805 Receptor kinase-like Gene Family AT3G46290 49.879 0.0 762
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Sebi221g00056 Malectin_like 3.9e-39 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi221g00056 - - gmx:100809700 1358.2