Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi221g00041 ATGAACGAGAAGGCCAACGTTTCTAAGGAACTCAACGCCAAGCACAGAAAGATACTGGAAGGACTTCTTAAATTACCAGAGAATAAGGAATGTGCTGACTGCAAAGCTAAAGGCCCGAGATGGGCTAGTGTCAATCTTGGCATCTTTATATGCATGCAGTGTTCAGGAATACATCGAGGCCTTGGGGTACACATCTCAAAGGTAATTTGCATCTTGGTTGTTGTCATAAGTAGCACTGCTGTTCGCTCTGCTACTTTGGACACCTGGCTTCCAGAGCAGGTTGCATTCATTCAATCGATGGGAAATGAGAAGGCAAATAGTTACTGGGAAGCAGAATTACCCCCAAATTATGATAGAGTTGGAATTGAAAATTTCATTCGTGCAAAGTATGAAGAGAAGAGATGGGTTGCAAAGGATGGTAGGCCAAAACCACCTTCGAGTCTGCGAGAAGAGAAAACTCCTTCAGATTGGCAAAGGCCTGTCGAAAGAGGTGGGCATAGTTATGCAGCTGCATCTGAGAATACTTCTGAGGAAAGGAGGAAAATCCAACCATCAAATGCAATTCCTGCCACAAGAATTAGTGTTCCTGCTCCTCCCAAAGGACCTACGCTGGTAACTCCTGTGAACAAACCTCAGCATATCGAGAAAGTGGAACCTGTGGTGCCACAACCACAGGCTGAAACTTCACAGACTGCTAGCACAGCTCAAAATTCCACTCCAAAAGTTGACTATGCTACAGACCTTTTTGACATGTTGTCTATGGATGGTCCAAGTGAAAAGGACTCAGGGGCAGCTGATGCTACTGCCGACGATAATAACTGGGCAGCTGCTGCAGAGACATCGACAGCTGAGAAGACTGATACTGTGAAAGTGGTTGAGAGTACACCCCAGTCCACGTCGGGGATTGAGGATCTATTTAAAGATTCACCTTCTGTGACACCAAGCTCAGCTCCAGAAAAACCACAAAAAGATGTTAAAAATGATATCATGAGCCTCTTTGAGAAGACCAATATGGTGTCTCCATTTGCTATGCATCAACAACAGCTAGCTATGCTGGCACAGCAACAGTCTCTTCTGATGGCTGCTGCTGCTAAATCTGCTGGTGGGGATTCCAAGCATCCCGCTAGCGTACAACAACCTGGGGCCAACATTCCTGTCCAAAGTTGGCCAGCTGCTAGTTACCCAATTCCAGGAGTAGTGCCCGTTGGTTCTCAGGGAGAATTGCAGAAACTAATGCAGACAATGAACATCACTTCAGCACATCCAGCAGGGAGCTCAGTTCAGTATCCACCATCTAGTTACTATACTATGGGGCAAGTTGCTCCAGCTAATGGTATGATGACAACGGGAGCGAGTAAACCTCAGTCACCAGCTCCGGTATCATCAACCACTTCACAAACGGGAAATGATTATGATTTTTCCTCCTTAACACAAGGAATGTTTGCGAAACACTGA 1455 0.4584 MNEKANVSKELNAKHRKILEGLLKLPENKECADCKAKGPRWASVNLGIFICMQCSGIHRGLGVHISKVICILVVVISSTAVRSATLDTWLPEQVAFIQSMGNEKANSYWEAELPPNYDRVGIENFIRAKYEEKRWVAKDGRPKPPSSLREEKTPSDWQRPVERGGHSYAAASENTSEERRKIQPSNAIPATRISVPAPPKGPTLVTPVNKPQHIEKVEPVVPQPQAETSQTASTAQNSTPKVDYATDLFDMLSMDGPSEKDSGAADATADDNNWAAAAETSTAEKTDTVKVVESTPQSTSGIEDLFKDSPSVTPSSAPEKPQKDVKNDIMSLFEKTNMVSPFAMHQQQLAMLAQQQSLLMAAAAKSAGGDSKHPASVQQPGANIPVQSWPAASYPIPGVVPVGSQGELQKLMQTMNITSAHPAGSSVQYPPSSYYTMGQVAPANGMMTTGASKPQSPAPVSSTTSQTGNDYDFSSLTQGMFAKH 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi221g00041 484 MobiDBLite consensus disorder prediction 137 202 - -
Sebi221g00041 484 MobiDBLite consensus disorder prediction 276 323 - -
Sebi221g00041 484 Gene3D Arf GTPase activating protein 1 142 IPR038508 -
Sebi221g00041 484 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD5 1 484 IPR044520 GO:0005096
Sebi221g00041 484 SUPERFAMILY ArfGap/RecO-like zinc finger 15 137 IPR037278 -
Sebi221g00041 484 SMART arf_gap_3 16 143 IPR001164 GO:0005096
Sebi221g00041 484 FunFam stromal membrane-associated protein 1 isoform X1 1 141 - -
Sebi221g00041 484 MobiDBLite consensus disorder prediction 137 159 - -
Sebi221g00041 484 MobiDBLite consensus disorder prediction 223 241 - -
Sebi221g00041 484 MobiDBLite consensus disorder prediction 220 241 - -
Sebi221g00041 484 Pfam Putative GTPase activating protein for Arf 17 138 IPR001164 GO:0005096
Sebi221g00041 484 PRINTS HIV Rev interacting protein signature 47 64 IPR001164 GO:0005096
Sebi221g00041 484 PRINTS HIV Rev interacting protein signature 28 47 IPR001164 GO:0005096
Sebi221g00041 484 PRINTS HIV Rev interacting protein signature 81 102 IPR001164 GO:0005096
Sebi221g00041 484 CDD ArfGap 19 130 - -
Sebi221g00041 484 ProSiteProfiles ARF GTPase-activating proteins domain profile. 16 143 IPR001164 GO:0005096
Sebi221g00041 484 MobiDBLite consensus disorder prediction 446 472 - -
Sebi221g00041 484 MobiDBLite consensus disorder prediction 276 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi221g00041 Sebi-Chr221 749723 755377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi221g00041 2 136 C2H2 Transcription Factor Family AT4G05330 41.259 4.13e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi221g00041 K12486 - gmx:100807561 719.924