Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi221g00011 ATGGAGGATCTCCCACCTGGTTTTCGTTTCTACCCAACAGAAGAGGAGCTAGTTGGCTTCTATCTACACAACCAGCTTGAAGGGCAACTACACCACATCAACAGAGTTATCCCAGTCATTGATATCAATGGTGTAGAGCCCTGGAACCTTCCAACACTTGCAGGGGAGCTGTGTCGTGGTGACACGGAGCAATGGTTTTTCTTTTCACCAAGACAAGAGAGAGAGGCCAGGGGAGGAAGACCCAACAGAACCACAGGTAGTGGGTATTGGAAGGCCACGGGTTCTCCTGGTCACGTTTACTCTGCTGACAACAAAGTCATTGGGATGAAGAAAACCATGGTGTTTTACAATGGAAAAGCTCCTAGTGGAAAGAAAACCAAATGGAAGATGCATGAATACAAAGCCATTGAACACACTAATAACCAATCCAACCCAGCCACTCCTAAGTTGAGGCACGAATTCAGCTTGTGTCGTGTTTATGTCATATCGGGAAGCTTTCGATCATTTGATAGACGTCCATTAGAGAGGCCAAGAGTGGGATTAAGACAGCTTGATGCTTCAGCTTCAACAAGTGCTCATCAGCAGGTAGCAGCAGAGGTTGATGGATCAAGCTCCTCTGAAACTTCTCACTCTGGAGGAGACCAACGTGATGATGCTCAGGCTGGAGGGTCAAGTGGCACAAATTGGAATGTTGCACATAATGAGGTGGAAGGACCTCTTTGGGAATTAGAGCAACTTGATTGGCTCTAA 750 0.468 MEDLPPGFRFYPTEEELVGFYLHNQLEGQLHHINRVIPVIDINGVEPWNLPTLAGELCRGDTEQWFFFSPRQEREARGGRPNRTTGSGYWKATGSPGHVYSADNKVIGMKKTMVFYNGKAPSGKKTKWKMHEYKAIEHTNNQSNPATPKLRHEFSLCRVYVISGSFRSFDRRPLERPRVGLRQLDASASTSAHQQVAAEVDGSSSSETSHSGGDQRDDAQAGGSSGTNWNVAHNEVEGPLWELEQLDWL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi221g00011 249 Gene3D NAC domain 13 165 IPR036093 GO:0003677|GO:0006355
Sebi221g00011 249 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Sebi221g00011 249 MobiDBLite consensus disorder prediction 218 232 - -
Sebi221g00011 249 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 191 - -
Sebi221g00011 249 MobiDBLite consensus disorder prediction 185 210 - -
Sebi221g00011 249 SUPERFAMILY NAC domain 3 160 IPR036093 GO:0003677|GO:0006355
Sebi221g00011 249 ProSiteProfiles NAC domain profile. 4 162 IPR003441 GO:0003677|GO:0006355
Sebi221g00011 249 MobiDBLite consensus disorder prediction 185 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi221g00011 Sebi-Chr221 291946 293099 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi221g00011 2 248 NAC Transcription Factor Family AT3G44350 55.466 1.56e-92 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi221g00011 NAM 4.2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi221g00011 - - gmx:100780264 395.971