Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi220g00071 ATGACGATCCAGAGAGACAGTGTTAAGGAAGAACTCCGACTAGCCCTAGAACAGAAGTTATCACTAGAGAGTCAAATTGCATCATCTGAACTTATGATAAAGGAGTTGGAGCAGAAGATTATATCTGCTGTGGACCTGTTACAAAGCTACAAGAATGAGCGAGATGAATTGCAGTTGCAGCGTGATAATGCATTGAGAGAGGCTGAAGAGTTGAGGAAAAAACAAGGAGAGGCCTCGAGCACCCATGTGCCTCAATTGTTCTCAGAATTCTCATTTTTTGAGATTGAAGAAGCAACACGGAACTTCGATCCATCCCTAAAGATTGGAGAAGGTGGATATGGAAGTATATTTAAAGGTGTCCTGCGTCACACTGAGGTTGATGTATTGAGCAAGCTAAGGCATCCCAATCTTATCACACTTATAGGGGCCTGCCCTGAATCCTGGTCTCTTGTCTATGAGTATTTACCCAATGGAAGCCTTGAAGACCGTCTTGCCTGCAAGGATAACACACCTCCTTTATCATGGCAAACTCGGATTCGCATTTCTGCAGAACTGTGTTCTGCTCTCATCTTTCTCCACTCCAGTAAACCTCACAGCATAGTGCATGGTGACTTAAAACCCTCAAATATTCTCTTAGATGCAAACCTCATTAGCAAGCTTAGCGACTTTGGAATCTGTCGAATACTATCTCATTATGAGAGTTCTAGTAATAACACTACACAGTTTTGGAAAACTGACCCGAAGGGAACTTTTGTCTACATGGATCCTGAATTCCTTGCTTCAGGGGAACTTACTCCAAAGTCAGATGTCTATTCATTCGGAATCATACTATTGAGATTGTTGACCGGGAGACCAGCCCTGGGAATAACTAAGGAAGTGAAATATGCAGTAGATACTGGAAAGTTGAAATCCCTATTGGATCCTTTGGCTGGAGACTGGCCATTTGTGCAAGCTGAACAGTTGGCTCGCTTAGCTTTGAGGTGTTGTGAGATGAATAGGAAGAGCCGGCCAGATCTTTATTCAGATGTATGGAGGATACTTGATGCAATGAGAGCTTCTACTGGAGGCACAAACTCCTTTGGATTAAGTTCTGAAGGGCTTCACCATCCTCCTTCATATTTTATTTGCCCAATCTTCCAGGAAGTCATGCGAGATCCACATGTAGCTGCAGATGGTTTTACTTATGAAGCTGAGGCTATAAGAGGATGGCTTGATAGTGGTCATGACACATCACCAATGACAAATAGTAAGCTTGCACATCAGAATCTTGTTCCGAATCGCGCTCTTCGCTCTGCAATCCAAGACTGGCTTCAAAGTCATTGA 1323 0.4324 MTIQRDSVKEELRLALEQKLSLESQIASSELMIKELEQKIISAVDLLQSYKNERDELQLQRDNALREAEELRKKQGEASSTHVPQLFSEFSFFEIEEATRNFDPSLKIGEGGYGSIFKGVLRHTEVDVLSKLRHPNLITLIGACPESWSLVYEYLPNGSLEDRLACKDNTPPLSWQTRIRISAELCSALIFLHSSKPHSIVHGDLKPSNILLDANLISKLSDFGICRILSHYESSSNNTTQFWKTDPKGTFVYMDPEFLASGELTPKSDVYSFGIILLRLLTGRPALGITKEVKYAVDTGKLKSLLDPLAGDWPFVQAEQLARLALRCCEMNRKSRPDLYSDVWRILDAMRASTGGTNSFGLSSEGLHHPPSYFICPIFQEVMRDPHVAADGFTYEAEAIRGWLDSGHDTSPMTNSKLAHQNLVPNRALRSAIQDWLQSH 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi220g00071 440 Coils Coil 5 74 - -
Sebi220g00071 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Sebi220g00071 440 Pfam U-box domain 371 440 IPR003613 GO:0004842|GO:0016567
Sebi220g00071 440 Gene3D Transferase(Phosphotransferase) domain 1 159 359 - -
Sebi220g00071 440 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 368 440 IPR013083 -
Sebi220g00071 440 FunFam U-box domain-containing protein 54 369 440 - -
Sebi220g00071 440 SUPERFAMILY RING/U-box 364 439 - -
Sebi220g00071 440 ProSiteProfiles U-box domain profile. 369 440 IPR003613 GO:0004842|GO:0016567
Sebi220g00071 440 CDD RING-Ubox_WDSUB1-like 371 426 - -
Sebi220g00071 440 PANTHER OS02G0152300 PROTEIN 4 435 - -
Sebi220g00071 440 ProSiteProfiles Protein kinase domain profile. 102 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi220g00071 440 SMART serkin_6 102 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi220g00071 440 Gene3D Phosphorylase Kinase; domain 1 126 158 - -
Sebi220g00071 440 SMART Ubox_2 373 436 IPR003613 GO:0004842|GO:0016567
Sebi220g00071 440 Gene3D Phosphorylase Kinase; domain 1 80 125 - -
Sebi220g00071 440 SUPERFAMILY Protein kinase-like (PK-like) 79 340 IPR011009 -
Sebi220g00071 440 Pfam Protein kinase domain 124 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi220g00071 Sebi-Chr220 1204660 1206944 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi220g00071 4 440 U-box Gene Family AT2G45910 64.989 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Sebi220g00071 Pkinase 6.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi220g00071 - - gmx:100807515 790.415