Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi220g00042 ATGACATTTACTCATGGGTGGAATCAATTGCATGAAATTTATGGTTTGAATGATGGAGGTTGGATGAAACTCTGTTTCATTGGCAACGGTGATTTTGACATTGAGATTCAGGATAAGTTCCTAAACGAAATCAAATATCCACAGCCGGCAAATAGTTATTCATTGTCTGATGAAATTGTTGAAGCTTTTAAAAAGAAGGAAGATGATGAAGATATCGTGTTCTTCTACTTTGAGAGAATATTGACTGAATCTGATATCCTGACTGACTACTTTGTCTTACCTGAACTTTATACTTCTTCAGTACTTATTAAAGAAATGGAATATGTTTTCCTCGAAGATGATTATGGAAATACTTGGAAGTGTGTTGTTACTTGGCTTGACAATAAACCAAATGAAGCTGTTTTGTCTCGAGGATACAATGTATTCTGCAACGAGAAGGGCATTAAACCTGGCTCTCGAATTCGTGTTGTTGAGAGTTTGGCTGGATTTACCTCAAACAACAGACAATGCAAACCATGTCATTATTCCGAAATTTCAACTGAAGGTTTAATTCCTTCGAGTCAGTTAACAAAAGAAAACTTTTCACCTTCTTTGGCATCGAAAAGAATTTTCTTTCAATCTGGAAAAGAAAATATTTTGAATCAAGGCTCTACTTCTCAAGTGGCCAAAGTTAACAACCACTATGTTATCCAAGATTCTCAAAATAATCTGCCTATGAGTAATACTTTTAGGAGTCCTCTTTCAACAATTACCAATTCAACTAATCTGAATTGTAGGGGTAGTGAACAAAACACATTTAATAATCATGATCAATCTTCGAGGAATAGGAATACAAATAGCTCCTCATCAAGGAGCAACCATTCTATCAACAGTGGAAAACATGTTATTCAAAATTCAAGAATTATTCAGTCAATTTCTCAAAATCTGTCTGAAGCATTTGATAAAGAGGCCCCAACTCCTCAAAATGAGGACTCTGTTAGACAAAATTTAATTGATCCATTTCAGGATTATGAAGTGATTAACAGTTTTGATGATTCAAATTTGCAAAATGACATTGATGAACCTGATATTTTGTAG 1077 0.3417 MTFTHGWNQLHEIYGLNDGGWMKLCFIGNGDFDIEIQDKFLNEIKYPQPANSYSLSDEIVEAFKKKEDDEDIVFFYFERILTESDILTDYFVLPELYTSSVLIKEMEYVFLEDDYGNTWKCVVTWLDNKPNEAVLSRGYNVFCNEKGIKPGSRIRVVESLAGFTSNNRQCKPCHYSEISTEGLIPSSQLTKENFSPSLASKRIFFQSGKENILNQGSTSQVAKVNNHYVIQDSQNNLPMSNTFRSPLSTITNSTNLNCRGSEQNTFNNHDQSSRNRNTNSSSSRSNHSINSGKHVIQNSRIIQSISQNLSEAFDKEAPTPQNEDSVRQNLIDPFQDYEVINSFDDSNLQNDIDEPDIL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi220g00042 358 SUPERFAMILY DNA-binding pseudobarrel domain 75 154 IPR015300 -
Sebi220g00042 358 Gene3D - 56 155 IPR015300 -
Sebi220g00042 358 Pfam B3 DNA binding domain 77 151 IPR003340 GO:0003677
Sebi220g00042 358 MobiDBLite consensus disorder prediction 261 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi220g00042 Sebi-Chr220 659338 661582 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi220g00042 B3 1.8e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi220g00042 - K24243 tpra:123908244 57.3806