Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi220g00040 ATGTATGAAAAGGGAGAATTAAGTAATGCTATGAAAAAGCGAAGGATCGAGATGAATGTCGATAATGATGATCCTCATACATGGTACATGCCGCGGTGGCAATGGATAGAGTACGATCCTGAAATGGGTTTTGTCAGGGCTGCTTCCCAGTTTGCAAGGGATTTCTGGGAGATTATTTCTAGGAGGGTGCAATTTGTGGACCCTGTTGACAACAAAATAAATGTTGTTGTAAGAAAGGATGAAGATGACATGTGGTTTACTCATGGTTGGAATCTGCTAAAAGATATTTATGTTCTTAACGACGGTGGATGGATCAAACTATACTATAAGGATAGAACTGTTTTCAAAAATTTTGTTTATGATAGGGATTTTGAAGAGGTTCAGTGTCCTATTCCTGTTAAGGAATATGACAGTGGGTTAACCTTTTCTGAAGAAATTGTTCCTGGATATCGTGAGACTGATAATACTGATATTCATCATGTTGATAAGAGGATGACAGAGTTGCATGCAAGTGGAACTGTTCTGAACTTGCCAACTGCTCTGTATGAGAGATTTAGGCACAAAGTTGATTCTGGGGTGCTGAGGGATAAGAATGGTGTTGCTTTTCCTATTAATTTGTCATGGTCTTTGAATGGGAAGGTTGCTTACATCACAAAGGGATGGAAGGAGTTTAGTTTGGAGAAGAATCTGGAGAGGGGCTCTGTTGTCAGATTTAGAGTTGATCCTTCTGATTCTGGTGTTATCCATACAAAAGTCCTTGAAGCATGA 768 0.3932 MYEKGELSNAMKKRRIEMNVDNDDPHTWYMPRWQWIEYDPEMGFVRAASQFARDFWEIISRRVQFVDPVDNKINVVVRKDEDDMWFTHGWNLLKDIYVLNDGGWIKLYYKDRTVFKNFVYDRDFEEVQCPIPVKEYDSGLTFSEEIVPGYRETDNTDIHHVDKRMTELHASGTVLNLPTALYERFRHKVDSGVLRDKNGVAFPINLSWSLNGKVAYITKGWKEFSLEKNLERGSVVRFRVDPSDSGVIHTKVLEA 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi220g00040 255 SUPERFAMILY DNA-binding pseudobarrel domain 49 122 IPR015300 -
Sebi220g00040 255 Pfam B3 DNA binding domain 192 248 IPR003340 GO:0003677
Sebi220g00040 255 CDD B3_DNA 163 245 IPR003340 GO:0003677
Sebi220g00040 255 ProSiteProfiles B3 DNA-binding domain profile. 193 255 IPR003340 GO:0003677
Sebi220g00040 255 Gene3D - 150 254 IPR015300 -
Sebi220g00040 255 SUPERFAMILY DNA-binding pseudobarrel domain 155 244 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi220g00040 Sebi-Chr220 653873 654829 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi220g00040 44 131 B3 DNA Binding Superfamily AT1G49475 22.727 4.07e-06 44.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi220g00040 B3 2.8e-07 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi220g00040 - - lja:Lj4g3v0423150.1 61.6178