Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi220g00038 ATGGGGATTGAGTGCTCCAGACTATTGCCATGTTGCGTGGATTCACAAGTTAAGGCATCAATTCTTGAAGTTCCAGATACTGAAAATGAGGATAGAATTGAGGCCAATGATGGGCCTGCATTTCGTGAATTTACGTTGGAGCAACTTAATAATGCAACATCTGGTTTTGCTGTTGAGAATATAGTATCTGAACATGGAGAGAAGGCTCCAAATGTTGTTTATAAAGGAAAGATGGAGAATCAAATGAGGATTGCTGTTAAGCGGTTTAATAGAAATGCTTGGCCTGATGCTCGGCAGTTTTTGGAGGAAGCTAGATCCGTTGGTCAGCTTCGTAACCAAAGATTGGCAAATTTGCTTGGTTGTTGTTGTGAAGGCGATGAGAGGTTGCTTGTGGCCGAATATATGCCCAATGAAACACTAGCAAAACACCTTTTCCATTGGGAAACACAACCAATGAAATGGGCAATGCGACTCAGAGTTGTTCTACATCTTGCAGAAGCTCTAGAATACTGCACAAGCAAAGGGCGTGCCCTCTATCATGACCTTAATGCATATAGAGTTTTATTTGATGAGGATGGTAATCCTAGGCTTTCAAGTTTTGGTCTTATGAAGAATAGTAGGGATGGGAAAAGTTATAGCACAAATTTGGCGTTTACCCCTCCAGAATATCTCAGAACTGGGAGAGTAACACCAGAAAGTGTAATATATAGCTTTGGCACTCTTTTGCTTGACCTTCTTAGTGGGAAGCATATCCCCCCTAGTCATTATGAACCTAGGGAAAGGCCTAATCCAAAGTCATTAGTAGCAGCTTTGGCTCCTCTTCAGAAAGAAACAGAGGTTCCTTCACAGTTATTGATGGGTATCCCACATAGTGCTACAGTTGCTTCATTGTCCCCACTTGGTGAAGCATGTTCAAGAAAGGACTTGACCGCCATACATGAAGTTCTTGAAAATATTGGCTATAAAGATGATGAAGGAGTGACAAATGAGTTATCCTTCCAGATGTGGACTGATCAAATGCAGGACACACTAAATTGTAAGAAAAAAGGGGATGCTGCTTTCCGGCAGAAAGACTTTAGACTAGCAATTGAGTGCTATACACAGTTCATTGATGTTGGAACAATGGTTTCTCCAACTGTGCATGCGCGGCGCAGTTTGTGTTATCTCATTAGTGAGATGCCTCAGGAAGCACTGAGCGATGCAATGCAAGCCCAAGTAATTTCCCCTGTATGGCACATTGCATCTTATCTTCAATCTGTTTCCCTGGCTGGCCTTGGGATGGATAATGAAGCACAAATTGCACTTATAGAGGGAACAACACTGGAAGCCAAGCGAAATACACCTTCACAAAAGTGA 1356 0.4226 MGIECSRLLPCCVDSQVKASILEVPDTENEDRIEANDGPAFREFTLEQLNNATSGFAVENIVSEHGEKAPNVVYKGKMENQMRIAVKRFNRNAWPDARQFLEEARSVGQLRNQRLANLLGCCCEGDERLLVAEYMPNETLAKHLFHWETQPMKWAMRLRVVLHLAEALEYCTSKGRALYHDLNAYRVLFDEDGNPRLSSFGLMKNSRDGKSYSTNLAFTPPEYLRTGRVTPESVIYSFGTLLLDLLSGKHIPPSHYEPRERPNPKSLVAALAPLQKETEVPSQLLMGIPHSATVASLSPLGEACSRKDLTAIHEVLENIGYKDDEGVTNELSFQMWTDQMQDTLNCKKKGDAAFRQKDFRLAIECYTQFIDVGTMVSPTVHARRSLCYLISEMPQEALSDAMQAQVISPVWHIASYLQSVSLAGLGMDNEAQIALIEGTTLEAKRNTPSQK 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi220g00038 451 FunFam probable serine/threonine-protein kinase At4g35230 341 450 - -
Sebi220g00038 451 Pfam Protein tyrosine and serine/threonine kinase 72 254 IPR001245 GO:0004672|GO:0006468
Sebi220g00038 451 FunFam probable serine/threonine-protein kinase At4g35230 31 134 - -
Sebi220g00038 451 SUPERFAMILY TPR-like 342 436 IPR011990 GO:0005515
Sebi220g00038 451 Gene3D Tetratricopeptide repeat domain 341 451 IPR011990 GO:0005515
Sebi220g00038 451 ProSiteProfiles Protein kinase domain profile. 59 370 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi220g00038 451 Gene3D Transferase(Phosphotransferase) domain 1 136 323 - -
Sebi220g00038 451 Gene3D Phosphorylase Kinase; domain 1 30 134 - -
Sebi220g00038 451 SUPERFAMILY Protein kinase-like (PK-like) 40 273 IPR011009 -
Sebi220g00038 451 PANTHER SERINE/THREONINE-PROTEIN KINASE BSK5 22 255 IPR045845 GO:0004672|GO:0009742
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi220g00038 Sebi-Chr220 640332 646734 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi220g00038 29 277 Glycoside Hydrolase AT3G07070 34.615 1.07e-37 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XII-1 Sebi220g00038 PK_Tyr_Ser-Thr 6e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi220g00038 K14500 - gmx:100781311 814.683