Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi220g00027 ATGGGACGTGTGATCCGTGCACAGCGTAAGGGTGCGGGTTCTGTATTCAAGTCCCACACTCACCACCGCAAGGGACCAGCTCGCTTCCGCAGTCTCGACTTCGGCGAACGTAACGGTTACCTTAAGGGCGTCGTAACGGACATTATCCATGATCCAGGTCGCGGTGCACCACTTGCTAAGGTCACTTTCCGTCATCCTTTCCGTTACAAGAAGCAGAACGAGCTCTTCATCGCTGCTGAAGGTCTCTACAGTGGCCAATTCGTTTACTGTGGCAAGAAAGCCACTCTCGTCGTTGGTAACGTCTTGCCTCTCCGTTCTATCCCCGAAGGAGCTGTTATCTGCAACGTCGAACACCACGTCGGTGACCGCGGTGTCTTCGCTAGAGCCTCCGTAAAAAGTTATTTAGGTTACACGATCAAGCTTCCATCTGGTGCAAAGAAGATTGTACCAAGTGAGTGTAGGGCAATGATTGGTCAAGTTGCTGGTGGTGGGAGAACTGAGAAGCCACTTCTTAAAGCTGGTAATGCTTATCACAAGTTTAGAGTGAAGAGAAATTGCTGGCCGAAGGTGCGTGGTGTTGCTATGAACCCTGTTGAGCATCCTCACGGAGGAGGTAACCACCAGCACATTGGACATGCTAGTACTGTCAGACGTGATGCTCCTCCTGGCCAGAAGGTTGGTCTCATTGCTGCCAAGAGAACTGGTCGTCTCAGGGGACAAGCTGCTGCTACTGCTGCTAAAGCTGATAAGGGTGCTTGA 759 0.5165 MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAKVTFRHPFRYKKQNELFIAAEGLYSGQFVYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASVKSYLGYTIKLPSGAKKIVPSECRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATAAKADKGA 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi220g00027 252 FunFam 60S ribosomal protein L2 161 238 - -
Sebi220g00027 252 SUPERFAMILY Translation proteins SH3-like domain 99 237 IPR008991 -
Sebi220g00027 252 ProSitePatterns Ribosomal protein L2 signature. 188 199 IPR022671 GO:0003735|GO:0005840|GO:0006412
Sebi220g00027 252 PANTHER RIBOSOMAL PROTEIN L2 2 245 IPR002171 GO:0003735|GO:0005840|GO:0006412
Sebi220g00027 252 Gene3D - 1 86 IPR012340 -
Sebi220g00027 252 SMART Ribosomal_L2_2 11 90 IPR002171 GO:0003735|GO:0005840|GO:0006412
Sebi220g00027 252 SUPERFAMILY Nucleic acid-binding proteins 1 97 IPR012340 -
Sebi220g00027 252 PIRSF RPL2p_RPL2a_RPL8e_RPL2o 1 246 IPR002171 GO:0003735|GO:0005840|GO:0006412
Sebi220g00027 252 Gene3D Ribosomal protein L2, domain 3 161 238 IPR014726 -
Sebi220g00027 252 SMART Ribosomal_L2_C_2 96 222 IPR022669 GO:0003735|GO:0005840|GO:0006412
Sebi220g00027 252 Pfam Ribosomal Proteins L2, RNA binding domain 13 90 IPR022666 GO:0003735|GO:0005840|GO:0006412
Sebi220g00027 252 MobiDBLite consensus disorder prediction 201 221 - -
Sebi220g00027 252 FunFam 60S ribosomal protein L2 1 86 - -
Sebi220g00027 252 Pfam Ribosomal Proteins L2, C-terminal domain 98 216 IPR022669 GO:0003735|GO:0005840|GO:0006412
Sebi220g00027 252 Gene3D - 90 160 IPR014722 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi220g00027 Sebi-Chr220 449697 451435 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi220g00027 1 249 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 86.434 2.80e-164 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi220g00027 K02938 - gmx:100802137 462.611