Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi220g00022 ATGAACAATAGAGCGAGATACCCACCTGGGATCGGGTTAGGGCGAGGTGGTGGTGGTTTGAACTCAAACCCTGGGACCCAGTTGGGTGGTACTGACACCAACGTTGTTGAGGAAGTTGAGAAGACTGTACAGTCTGAAGCCGTTGACCCTAGTTCACAAGATTGGAAGGCAAGACTAAATATTCCACCTCCTGATACACGCTATAGGACAGAGGATGTAACAGCAACTAAAGGAAACGAATTTGAGGATTACTTTCTGAAGCGTGAGCTGCTCATGGGAATATATGAGAAGGGTTTTGAAAGGCCGTCTCCTATCCAAGAAGAAAGCATTCCAATTGCTCTTACTGGTAGTGACATTCTTGCTAGGGCTAAAAATGGAACAGGCAAAACAGCTGCATTTTGTATTCCCGCATTGGAAAAAATTGATCAGGATAATAATGTTATTCAAGTTGTTATACTGGTCCCAACACGAGAATTGGCTTTGCAAACATCTCAAGTGTGTAAAGAGCTTGGAAAGCATTTGAAAATTCAAGTCATGGTTACAACAGGTGGTACAAGCCTGAAAGATGATATTATGCGATTATATCAACCAGTTCATTTGCTAGTTGGAACTCCAGGAAGAATATTAGATCTTGCAAAGAAGGGTGTTTGCATTCTGAAAAATTGCTCTATGCTTGTTATGGATGAGAGGAGTTCTTGTTGTCTGATATCCAGCTATGTTTCTATGGTTTCTGTCTGGTCTGCTAGGATAAGGACATACATCTTCTCCTTTGTGTCGTTTTCACATGTTCATTCTGCTGATAAGCTTCTCTCCCCTGAGTTCCAACCTTCAGTAGAGCAGCTAATTCAATTTCTTCCTTCAAACCGTCAGATCCTGATGTTTTCAGCTACATTTCCTGTTACTGTGAAGGACTTCAAAGATAGATATCTTCGTAAGTCGTATGTTATTAACCTTATGGATGAGCTAACTCTGAAGGGTATTACACAATATTATGCATTTGTGGAAGAGAGGCAGAAAGTCCACTGCCTGAATACTCTTTTCTCTAAGCTGCAAATAAACCAGTCCATCATCTTCTGCAATTCGGTGAATCGGGTTGAACTCCTTGCTAAGAAAATCACAGAACTTGGATATTCGTGTTTCTATATTCATGCAAAGATGTTGCAAGACCACCGAAATAGAGTTTTTCATGACTTTCGCAATGGTGCCTGCAGGAATCTGGTTTGCACTGATCTTTTCACTAGAGGAATAGATATCCAAGCAGTCAATGTTGTTATTAATTTTGATTTTCCAAAGAACTCAGAAACTTATCTGCACAGGGTTGGTCGTTCAGGAAGATTTGGGCACCTTGGTTTGGCAGTGAATTTGATCACTTATGAGGATCGCTTTAATTTATATAGGATTGAGCAAGAACTTGGCACTGAAATAAAACAAATCCCGCCACACATTGATCAGGCAATATATTGTAGCTTGATGTGA 1476 0.4051 MNNRARYPPGIGLGRGGGGLNSNPGTQLGGTDTNVVEEVEKTVQSEAVDPSSQDWKARLNIPPPDTRYRTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGSDILARAKNGTGKTAAFCIPALEKIDQDNNVIQVVILVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILDLAKKGVCILKNCSMLVMDERSSCCLISSYVSMVSVWSARIRTYIFSFVSFSHVHSADKLLSPEFQPSVEQLIQFLPSNRQILMFSATFPVTVKDFKDRYLRKSYVINLMDELTLKGITQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHRNRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKNSETYLHRVGRSGRFGHLGLAVNLITYEDRFNLYRIEQELGTEIKQIPPHIDQAIYCSLM 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi220g00022 491 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 79 107 IPR014014 GO:0003724
Sebi220g00022 491 CDD SF2_C_DEAD 327 456 - -
Sebi220g00022 491 SMART helicmild6 366 447 IPR001650 -
Sebi220g00022 491 SMART ultradead3 98 330 IPR014001 -
Sebi220g00022 491 CDD DEADc_DDX6 81 317 - -
Sebi220g00022 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 149 469 IPR027417 -
Sebi220g00022 491 MobiDBLite consensus disorder prediction 45 68 - -
Sebi220g00022 491 FunFam ATP-dependent RNA helicase DDX6 320 490 - -
Sebi220g00022 491 Gene3D - 38 319 IPR027417 -
Sebi220g00022 491 Pfam Helicase conserved C-terminal domain 341 447 IPR001650 -
Sebi220g00022 491 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 326 486 IPR001650 -
Sebi220g00022 491 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 41 488 - -
Sebi220g00022 491 MobiDBLite consensus disorder prediction 1 31 - -
Sebi220g00022 491 Gene3D - 320 490 IPR027417 -
Sebi220g00022 491 Pfam DEAD/DEAH box helicase 104 229 IPR011545 GO:0003676|GO:0005524
Sebi220g00022 491 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 110 316 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi220g00022 Sebi-Chr220 400759 405591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi220g00022 81 486 Eukaryotic Initiation Factors Gene Family AT3G19760 34.314 6.55e-86 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi220g00022 K12614 - qsa:O6P43_027218 817.764