Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi220g00021 ATGGGAAGGACACCATGTTGTGATAAGAAAGGTTTGAAGAAAGGACCATGGACACCTGAAGAGGATGAGATTCTTTCTAATTATATCAAGAAGAATGGTGGTCATGGAAGCTGGCGTTCTCTCCCAAAGATGACAGGTCTTCTTCGTTGTGGTAAGAGTTGCCGGCTAAGGTGGACGAACTATCTCAGACCTGACATAAAACGTGGTTCCTTTACTCCTGAGGAAGAAAAACTAGTCATACAGCTTCATGCCATCCTAGGAAATAGTAACCATGAGTTTTCAACAAATGTAACAATGTTCAGGTGGGCTGCCATTGCCTCTCAGTTACCAGGAAGAACTGATAATGAGATAAAGAACTTTTGGAACACCCACTTGAAGAAGCGTCTCAAAAGCATGGGACTTGACCCCAAAACCCACAAGCCAATGACCTCATTATCTGGTTACCCCACTGACAAGTCACATACATCTGTTTCCACACGCCACATGACTCAGTGGGAGAGTGCAAGGCTTGAAGCAGAGGCTAGGCTCTCATGTGATTCATCACTCTTCAACAACAACAACAACCCTTCCTCTACCAAAACTGAATCTGACTTTTTCCTCCGCATATGGAACTCTGAAGTTGGAGATGCATTTAGAAATATTATTAGCAAAACCAGTTGCTGCCAGAGTCCCCTTTCTGCAGGATCATCTTCTAACAAATGTGACTCAGTTTCTGCTGTTACAGCAGAGTTGGTAACCAACCCATTAGGATCCTTAAACACAGCAAGCAAAATTGTGAAAGAAGAGATGGAGTGGAGGAACACAAAAACATGTGGTGAAGATGTTATACATAGGTCTGATTCATCAAGTTCTAATGACTTAGAAGACTCATCTGACACTGCTTTGCAGCTCTTGTTAGATTTTCCTATAAACAATGACATGAGCTTCTTAGAAGGAAACTCCCTTGGTTGTCAATTGTCCCCTTTAGTTTAG 972 0.4239 MGRTPCCDKKGLKKGPWTPEEDEILSNYIKKNGGHGSWRSLPKMTGLLRCGKSCRLRWTNYLRPDIKRGSFTPEEEKLVIQLHAILGNSNHEFSTNVTMFRWAAIASQLPGRTDNEIKNFWNTHLKKRLKSMGLDPKTHKPMTSLSGYPTDKSHTSVSTRHMTQWESARLEAEARLSCDSSLFNNNNNPSSTKTESDFFLRIWNSEVGDAFRNIISKTSCCQSPLSAGSSSNKCDSVSAVTAELVTNPLGSLNTASKIVKEEMEWRNTKTCGEDVIHRSDSSSSNDLEDSSDTALQLLLDFPINNDMSFLEGNSLGCQLSPLV 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi220g00021 323 FunFam MYB transcription factor 69 142 - -
Sebi220g00021 323 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Sebi220g00021 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 129 IPR017930 -
Sebi220g00021 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 266 - -
Sebi220g00021 323 ProSiteProfiles Myb-like domain profile. 63 125 IPR001005 -
Sebi220g00021 323 SUPERFAMILY Homeodomain-like 11 121 IPR009057 -
Sebi220g00021 323 SMART sant 67 127 IPR001005 -
Sebi220g00021 323 SMART sant 13 64 IPR001005 -
Sebi220g00021 323 CDD SANT 16 62 IPR001005 -
Sebi220g00021 323 Gene3D - 11 68 - -
Sebi220g00021 323 CDD SANT 70 125 IPR001005 -
Sebi220g00021 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 66 IPR017930 -
Sebi220g00021 323 MobiDBLite consensus disorder prediction 133 157 - -
Sebi220g00021 323 MobiDBLite consensus disorder prediction 143 157 - -
Sebi220g00021 323 Gene3D - 70 129 - -
Sebi220g00021 323 FunFam Myb transcription factor 11 68 - -
Sebi220g00021 323 Pfam Myb-like DNA-binding domain 68 125 IPR001005 -
Sebi220g00021 323 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi220g00021 Sebi-Chr220 381192 383514 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi220g00021 1 313 MYB Transcription Factor Family AT3G61250 59.434 8.56e-119 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi220g00021 Myb_DNA-binding 9.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi220g00021 K09422 - gmx:100816569 428.328