Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi220g00016 ATGGGCTCTGAAGGAGGAACTAATGTTGAGTATGGTCTGAGAGAGAATCCCAAGAAAACTTGGAGACTCACAGATTCAAGTGAAGACAATTTGGTGTTGGACAAGTTCTGCAAAGAGTGTGGAAAGGGTTTTACTCCTGGAAAGCTCTATTCATGGACTAACAATGCTAGCCAATCTGATACTGAAGCTACTGTTCCAAATCGTAGGAGAAGATCCAAGAGAAGAAGAACAAGGTACATGACCACCCCAGTAACTTCTTCTATGTCTTTTGTTGCTGCCAATCCTTCTTCCTCTGTTTCTGAGGTAGAGCAAGAGCAAGAAGAGGTTGCTATGAGCTTGATTATGCTTAGCAGAGATATGAGTCCTTGGGGTGGTCTCAATTCTTTTGCTGCTGAATCCTCTGACAACAACTCATTGATGCAAAGAAACAGAGTTTTCATCAAGAATGGGAAGCTTGAGATTGATTCTGAGTCAGCAGCATTTGAGGCAAAGTTTTTGCATTCTGAACCCAAGTCAAGTTCTTTGAAGAACAAGAACTCTCATAAGAGAGGCAAGTTTGAGTGTACTACTTGCAACAAAATCTTCCCCTCCTACCAAGCTCTTGGAGGTCATAGAGCTAGTCATAAGAATATCAACAGTAATTGCTTTGCTTCAAGGAATGAAAGCAGTGAAAACAACATTGAATTGGAACCAGACCTCTCCCCTAACCCAACAGCAACAGAAAACACAGGTAGAGAGTCCAAGAACAGTAGCAAAGGGCATGAGTGCCCAATTTGCCTCAAGGTTTTTCCATCTGGGCAAGCCTTAGGTGGTCACAAGAGATCTCATTTGGCTAGTGAACCTCACAGTCAAACAGTGGTGCTTCAGGAAGCAGTTCCAGAAATCAGGAACTTCCTTGATCTTAATTCTTAA 912 0.4243 MGSEGGTNVEYGLRENPKKTWRLTDSSEDNLVLDKFCKECGKGFTPGKLYSWTNNASQSDTEATVPNRRRRSKRRRTRYMTTPVTSSMSFVAANPSSSVSEVEQEQEEVAMSLIMLSRDMSPWGGLNSFAAESSDNNSLMQRNRVFIKNGKLEIDSESAAFEAKFLHSEPKSSSLKNKNSHKRGKFECTTCNKIFPSYQALGGHRASHKNINSNCFASRNESSENNIELEPDLSPNPTATENTGRESKNSSKGHECPICLKVFPSGQALGGHKRSHLASEPHSQTVVLQEAVPEIRNFLDLNS 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi220g00016 303 MobiDBLite consensus disorder prediction 222 253 - -
Sebi220g00016 303 ProSitePatterns Zinc finger C2H2 type domain signature. 256 276 IPR013087 -
Sebi220g00016 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 254 281 IPR013087 -
Sebi220g00016 303 Pfam C2H2-type zinc finger 186 209 - -
Sebi220g00016 303 Pfam C2H2-type zinc finger 254 278 - -
Sebi220g00016 303 ProSiteProfiles Zinc finger C2H2 type domain profile. 186 213 IPR013087 -
Sebi220g00016 303 SMART c2h2final6 254 276 IPR013087 -
Sebi220g00016 303 SMART c2h2final6 186 208 IPR013087 -
Sebi220g00016 303 ProSitePatterns Zinc finger C2H2 type domain signature. 188 208 IPR013087 -
Sebi220g00016 303 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 4 302 - -
Sebi220g00016 303 Gene3D Classic Zinc Finger 183 276 - -
Sebi220g00016 303 MobiDBLite consensus disorder prediction 222 246 - -
Sebi220g00016 303 SUPERFAMILY beta-beta-alpha zinc fingers 186 276 IPR036236 -
Sebi220g00016 303 MobiDBLite consensus disorder prediction 56 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi220g00016 Sebi-Chr220 254450 255743 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi220g00016 85 302 C2H2 Transcription Factor Family AT2G45120 35.841 1.04e-23 97.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi220g00016 zf-C2H2_6 1.4e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi220g00016 - - vra:106757260 266.159