Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi220g00008 ATGCCGGCTGGTCATGGTCTGAGATCTCGCACGAGAGACTCCTTCTCTCGACCATTCAGGAAGAAGGGTACCATTGCCCTCACCACCTACCTCAGAACCTACCACATCGGCGACTATGTCGACATCAAGGTTGGGAACAGAATAATCAGAAAGAGGATTCATGTCCGTGTGGAGCATGTGATGCCTTCAAGGTGCACTGAGGAGTTCCGTTTGAGGAAGGTCAAGAATGATCAACTCAAGGCTGAGGCTAAGGCCAAGGGTGAGGTCATTAGCACCAAGAGACAGCCACAGGGTCCCAAACCAGGTTTTATGGTTGAAGGAGCTACATTGGAGACTGTTACTCCAATTCCTTACGATGTCGTAAATGACCTCAAGGGAGGATACTAG 387 0.4987 MPAGHGLRSRTRDSFSRPFRKKGTIALTTYLRTYHIGDYVDIKVGNRIIRKRIHVRVEHVMPSRCTEEFRLRKVKNDQLKAEAKAKGEVISTKRQPQGPKPGFMVEGATLETVTPIPYDVVNDLKGGY 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi220g00008 128 Pfam Ribosomal protein L21e 1 44 IPR001147 GO:0003735|GO:0005840|GO:0006412
Sebi220g00008 128 Gene3D - 63 120 - -
Sebi220g00008 128 FunFam 60S ribosomal protein L21 63 122 - -
Sebi220g00008 128 SUPERFAMILY Translation proteins SH3-like domain 3 63 IPR008991 -
Sebi220g00008 128 Gene3D Ribosomal protein L21 1 45 IPR036948 GO:0003735|GO:0005840|GO:0006412
Sebi220g00008 128 MobiDBLite consensus disorder prediction 82 104 - -
Sebi220g00008 128 PANTHER 60S RIBOSOMAL PROTEIN L21 1 44 IPR001147 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi220g00008 Sebi-Chr220 185533 186270 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi220g00008 1 128 Cytoplasmic Ribosomal Protein Gene Family AT1G09690 64.634 3.02e-70 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi220g00008 K02889 - gmx:100305629 240.736