Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi219g00029 ATGATGGCAGGCAGTGGACAACTAACAGTTCCTCCAGGCTTCAGGTTCCACCCTACTGATGAGGAGCTTCTTTACTATTACCTGAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTCATCAGAGAAGTAGATCTCAACAAACTTGAGCCTTGGGACCTCAAAGATAAATGTAGGATTGGGTCAGGACCTCAGAATGAATGGTATTTCTTCAGCCACAAGGACAAGAAATACCCAACAGGAACTCGAACAAATCGAGCAACCACAGCTGGATTTTGGAAAGCAACTGGAAGGGATAAGGCCATATACCACACCAATTCTAAGAGGATTGGGATGAGAAAAACCCTAGTGTTCTACACTGGTCGTGCTCCTCATGGCCAGAAGACTGACTGGATCATGCATGAGTACCGTCTTGATGATGATGACGCAGAGGTTCAGGAAGATGGGTGGGTGGTTTGCAGGGTCTTCAAAAAGAAAAACCAAAATAGAGGTTTCCAACAAGAAATTGAGGAAGAAGAACATTTAACCCACATGAGATCAACAAGTGGTCCTTGCCACCAGATTCTAGAGCCAAAACATCATCACATGCAAGGACTATATGATTGCACCTTTGATGGGGCAATTCACCTTCCACAATTGTTCAGTCCAGAATCAGCTGTAGCACCCACTTCCTCCATGAACGCCATGGACATCCTTGAATGCTCTCAAAACCTGTTGAGGCTCACAACAACTCCTGGATGTGGACTTAACCTTATGCAACAACATGGAGAGAGGTTCAATGGTGACTGGTCATTCTTGGATAAGCTACTAGCATCCCACCATGGCATGGATCATCCACAAACCAAATGTAATAACACTCATACTCAACAACATGCTCCAGCTGCAAATGTTGTGGGAACTTCTGCTCAGAAATTTCCATTTCATTACCTTGGTTGTGAGCCTCATGATATCATGAAATTTTCCAAGTAA 972 0.4383 MMAGSGQLTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDDDDAEVQEDGWVVCRVFKKKNQNRGFQQEIEEEEHLTHMRSTSGPCHQILEPKHHHMQGLYDCTFDGAIHLPQLFSPESAVAPTSSMNAMDILECSQNLLRLTTTPGCGLNLMQQHGERFNGDWSFLDKLLASHHGMDHPQTKCNNTHTQQHAPAANVVGTSAQKFPFHYLGCEPHDIMKFSK 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi219g00029 323 FunFam NAC domain-containing protein 19 163 - -
Sebi219g00029 323 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 250 - -
Sebi219g00029 323 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Sebi219g00029 323 ProSiteProfiles NAC domain profile. 10 159 IPR003441 GO:0003677|GO:0006355
Sebi219g00029 323 Pfam No apical meristem (NAM) protein 11 139 IPR003441 GO:0003677|GO:0006355
Sebi219g00029 323 Gene3D NAC domain 19 164 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi219g00029 Sebi-Chr219 1116271 1118718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi219g00029 2 323 NAC Transcription Factor Family AT1G79580 53.316 8.82e-120 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi219g00029 NAM 2.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi219g00029 - - vun:114178728 574.318