Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi219g00012 ATGCAGAGGAACAACAATTTATCAGAAGAACCTCATAAGACACACCACCACAGTGCTCATAGTTGTGCAAATTCAGGAAATAATTCACCAACTCATCACACAATGGGGAATCAAGCAGAAAAGGATGCCTGCACAACTGAGTATTCAACAAGTGGAGCTGGACATATGGACCATTCAACAAATGGAGCAGGACATATGGACCAGGTGTCTAAAACTGATGCAAAGTTGGCAAGTAACTCTAAACCTCAGAAAATAACACCATCAAGCAAGAACATTTCTGATTTCAGTAATCAACACCAAAGTCCAAGGACAAAGATGCCTTCAAATCCTGATCCTGCAACTCACTCACCACCAGGACTTCCAACAGGAACTACAAAGGGAATGTCTACCCATACAAAGACCACCAATCAAAACACAGGAAGTGGCACTAGCTCCCGCAGTGACAGTTTAGAGAGCACCAGTGCACCCATTAGGCCACATACTGGTGGTGATGTGAGGTGGGATGCAATTAACATGGTTTCCAAGAGTGGCCCTTTCAATCTCAGCCATTTCAGGCTTCTCAAACGCATTGGTTATGGAGACATTGGAAGTGTATATCTTGTGGAACTAAGGGGATCTAATGCCCACTTTGCCATGAAAGTAATGGACAAGGCAGCTCTTATAAGCAGAAATAAGCTTCTGCGAGCACAAACAGAAAGGGAGATTCTTGGACTTCTTGATCACCCCTTCTTGCCAACTTTATATTCTTACTTTGAAACTGATAAGTTTTACTGTTTGGTCATGGAGTTCTGTAGTGGGGGTGATCTTCATTCTCTTCGACAAAAGCAACCAAACAAGTGTTTCACTGAAGAAGCTGCAAGGTTTTATGCTTCAGAGGTTTTGTTGGCTCTAGAGTACCTGCACATGCTTGGCATTGTATACAGAGACTTAAAGCCAGAGAATCTTCTAGTCAGAGATGAAGGGCATATCATGCTCTCAGATTTTGATTTATCACTTCGCTGCTCTGTCAGTCCTACATTAGTCAAGTCTTCACCTACCAATGCAGGCAATGGTGGTGGTGGTGACTCTGGGGGTATGTTGGGTGATGACCAAGCAGTGCAAGGCAATGCACAACCTTCAGGCTTTTTCCCTCGCATTTTGCCTTCAAAGAAGAACAGAAAGGCAAAATCAGATTTTGGCCTATTGGTTGGTGGTGGAAATCGTCTTCCTGAACTGATGGCAGAACCCACCAATGTGAGGTCAATGTCATTTGTAGGGACACATGAATATCTTGCTCCTGAGATTATCAAAGGAGAGGGACATGGTAGTGCAGTAGATTGGTGGACTTTTGGGATCTTCTTGTATGAGCTATTGCATGGAACAACACCTTTTAAAGGTGCAGGATATAAAGCCACACTTTTTAATGTTGTTGGGCAGCCATTGAGGTTCCCAGAAACTCCCCAGATCAGTTCAACAGCTCGTGATCTTATAAAAGGATTGTTGGTGAAAGAACCTCAGAAGAGAATTGCATATAAAAGAGGAGCTACAGAAATAAAACAACACCCATTTTTTGAGGGAGTGAATTGGGCTCTAGTTAGAAGTGCCATGCCTCCCCATGTACCAGAACCCATAGACTTTTCCAAGTATGCTAGCAAAGACACAGCACCCCCACCTGAGAAGAAGATGGCAGATAATAATATTGCTCCTGATAAAAAGAGCAACAGTACTACAGATTCTTATGTAGAGTTTGAGTACTTTTAG 1740 0.4299 MQRNNNLSEEPHKTHHHSAHSCANSGNNSPTHHTMGNQAEKDACTTEYSTSGAGHMDHSTNGAGHMDQVSKTDAKLASNSKPQKITPSSKNISDFSNQHQSPRTKMPSNPDPATHSPPGLPTGTTKGMSTHTKTTNQNTGSGTSSRSDSLESTSAPIRPHTGGDVRWDAINMVSKSGPFNLSHFRLLKRIGYGDIGSVYLVELRGSNAHFAMKVMDKAALISRNKLLRAQTEREILGLLDHPFLPTLYSYFETDKFYCLVMEFCSGGDLHSLRQKQPNKCFTEEAARFYASEVLLALEYLHMLGIVYRDLKPENLLVRDEGHIMLSDFDLSLRCSVSPTLVKSSPTNAGNGGGGDSGGMLGDDQAVQGNAQPSGFFPRILPSKKNRKAKSDFGLLVGGGNRLPELMAEPTNVRSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLHGTTPFKGAGYKATLFNVVGQPLRFPETPQISSTARDLIKGLLVKEPQKRIAYKRGATEIKQHPFFEGVNWALVRSAMPPHVPEPIDFSKYASKDTAPPPEKKMADNNIAPDKKSNSTTDSYVEFEYF 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi219g00012 579 ProSitePatterns Serine/Threonine protein kinases active-site signature. 305 317 IPR008271 GO:0004672|GO:0006468
Sebi219g00012 579 MobiDBLite consensus disorder prediction 1 161 - -
Sebi219g00012 579 MobiDBLite consensus disorder prediction 118 156 - -
Sebi219g00012 579 MobiDBLite consensus disorder prediction 20 110 - -
Sebi219g00012 579 SMART serkin_6 184 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi219g00012 579 MobiDBLite consensus disorder prediction 539 579 - -
Sebi219g00012 579 Gene3D Transferase(Phosphotransferase) domain 1 270 534 - -
Sebi219g00012 579 FunFam Serine/threonine-protein kinase AGC1-7 410 535 - -
Sebi219g00012 579 Pfam Protein kinase domain 185 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi219g00012 579 Pfam Protein kinase domain 410 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi219g00012 579 MobiDBLite consensus disorder prediction 561 579 - -
Sebi219g00012 579 CDD STKc_phototropin_like 182 538 - -
Sebi219g00012 579 FunFam serine/threonine-protein kinase D6PK-like 268 335 - -
Sebi219g00012 579 MobiDBLite consensus disorder prediction 1 17 - -
Sebi219g00012 579 Gene3D Phosphorylase Kinase; domain 1 176 269 - -
Sebi219g00012 579 FunFam Serine/threonine-protein kinase AGC1-5 182 267 - -
Sebi219g00012 579 SUPERFAMILY Protein kinase-like (PK-like) 173 552 IPR011009 -
Sebi219g00012 579 ProSiteProfiles Protein kinase domain profile. 184 517 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi219g00012 579 PANTHER FLIPPASE KINASE 1-RELATED 18 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi219g00012 Sebi-Chr219 270245 272310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi219g00012 150 579 AGC Kinase Gene Family AT1G79250 73.951 0.0 668
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Sebi219g00012 Pkinase 3.1e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi219g00012 - - gmx:100784301 863.218